KEGG   Escherichia fergusonii: EFER_1278
Entry
EFER_1278         CDS       T00811                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
efe  Escherichia fergusonii
Pathway
efe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:efe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EFER_1278 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:efe03400]
    EFER_1278 (mfd)
Enzymes [BR:efe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     EFER_1278 (mfd)
DNA repair and recombination proteins [BR:efe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      EFER_1278 (mfd)
SSDB
Motif
Pfam: TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: CAQ88802
UniProt: B7LPP9
Position
complement(1314930..1318376)
AA seq 1148 aa
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SFLHGHALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSDLPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDAFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQTDTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPAKAANANLGFQKLPD
LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD
RGRYLMIGAAEHGFIDTVRNLALICESDLLGERVARRRQDSRRAINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGLIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWIRQFMR
ELEENAIA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggc
gagttaaccggtgctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgccggt
ccggtggtacttattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagc
cagtttaccgatcagatggtgatgaatctggcggactgggaaacccttccctacgacagt
ttttctcctcatcaggacattatctcctcacgcctttccactctttaccagctaccgacg
atgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgcgtttgcccgcac
agttttctccacggccacgcgctgatgatgaaaaaaggtcagcggttatctcgtgacgcc
ttgcgtacgcaactggacagtgccggttatcgccatgttgaccaggttatggagcacggc
gaatacgccacgcgcggcgcgttgctggatcttttcccgatgggcagcgacttgccttat
cgtcttgatttttttgatgatgaaatcgatagcctgcgcgtatttgacgttgacagccag
cgtacgctggaagaagtagaagcgatcaatctgttgcccgcgcacgaatttccgacagat
aaagcggcaattgaactgttccgcagccagtggcgcgatgccttcgaagtgaagcgcgat
ccggaacatatttatcagcaagtgagtaaaggcacattacctgccgggatcgagtactgg
cagccgctattcttcagcgaaccgctgccgccactgttcagttatttccctgccaatacg
ctgttggtgaatactggcgatctggaaaacagtgccgaacgtttccagactgacacgctg
gcgcgttttgaaaatcgcggcgtcgatccgatgcgcccgctattaccgccacaatcgctc
tggctgcgcgtagacgagctcttctcagagctgaaaaactggccccgggtgcagctaaaa
actgaacatttacctgcgaaagcagcgaatgccaatttaggtttccagaaactgccagac
ctggccgttcaggcacaacaaaaagcaccgctggatgcactgcgtaagttcctcgagtct
ttcgacggtccggtagtgttctcggtggaaagtgaaggccgtcgcgaagcgctgggtgag
ttgctcgcccgaatcaaaatcgccccacaacgcattatgcgtcttgatgaagccagcgac
cgcgggcgttatctgatgattggcgctgccgaacatggctttatcgatacggtacgtaat
ctggcgctgatttgcgaaagcgatctgctcggtgaacgtgttgctcgtcgccgtcaggac
tcacggcgcgccatcaatcctgacacgctgatccgtaacctcgcagagctgcacattggt
cagccggtggtccatctggagcacggcgtcgggcgctatgccggaatgaccacgctggaa
gccggcggcattaccggcgagtatttgatgctcacctatgccaacgacgccaaattgtat
gttccggtgtcgtcgctgcatctgattagccgttacgcaggtggcgcggaagaaaacgcc
ccgctgcataaacttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaa
gtgcgtgatgtggcggcggaattgctggatatctacgcacaacgcgccgccaaagagggc
ttcgcgtttaaacacgatcgtgagcagtatcagttgttctgcgacagcttcccgtttgaa
accacaccggatcaggcgcaggccattaatgcggtgcttagcgacatgtgtcagccgttg
gcaatggatcgtctggtgtgcggcgatgttggctttggtaaaactgaagtcgcgatgcgc
gccgctttcctggcggtagataaccacaagcaggtggcggtgctggtgcctaccaccctt
ctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgcatc
gaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcg
gaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaaatgacgtcaagttt
aaagatttaggtctgctgattgtcgatgaagaacaccgctttggggtgcgtcataaagag
cgcattaaagcgatgcgggcgaacgtggatattctgacacttaccgcaacgccgatccca
cgtacgctgaatatggcaatgagcggaatgcgcgatctgtcgattatcgctacgccgcct
gcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagtctggtggtccgggag
gcgatcctgcgtgaaattttgcgcgggggacaggtttattatctctacaatgatgtggaa
aacatccagaaagccgccgaacggctggcagaactggtgccagaagcgcggatcgccatc
ggtcacgggcagatgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaa
cgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacatccctaccgcc
aacaccattatcattgaacgcgcggatcacttcggtctggcacagctgcaccagttgcgc
ggtcgcgtcggacgttcgcatcatcaggcatatgcatggttgctgacgccgcatccaaaa
gcgatgaccaccgatgcgcaaaaacgtcttgaagcgattgcctcgctcgaagatctcgga
gcaggttttgcgctggcaacgcacgatctggagatccgcggcgcgggtgaactgcttggc
gaagaacaaagcggctcgatggaaaccatcggtttctcgctgtatatggagttgctggaa
aacgccgtcgatgcgctgaaagccggacgcgagccgtcgctggaagatctcaccagtcag
caaacagaagtcgagctgcggatgccgtcgctattgccagatgatttcattcctgacgtg
aatacgcgtttgtcgttctataaacgtattgccagcgccaaaacggaaaacgaactggaa
gagatcaaagttgagcttatcgatcgtttcggcctgctgccggatccggcacgcaccctg
ctggatattgctcgtttgcgccagcaagcgcagaagctggggatcaggaagctggaaggt
aatgagaaaggtggcttgatcgaatttgccgagaagaatcacgttaatccggcatggctg
attggtttgctgcaaaaacagccgcagcattatcgcctcgatggcccgacgcgcctgaag
tttattcaggatttgagcgagcggaaaacgcgtatcgaatggattcgccagtttatgcgt
gaactggaagagaacgcgatcgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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