KEGG   Entamoeba histolytica: EHI_121760
Entry
EHI_121760        CDS       T00238                                 
Symbol
147.t00005
Name
(RefSeq) DNA-directed RNA polymerase II large subunit
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
ehi  Entamoeba histolytica
Pathway
ehi03020  RNA polymerase
ehi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ehi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EHI_121760 (147.t00005)
  09124 Replication and repair
   03420 Nucleotide excision repair
    EHI_121760 (147.t00005)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ehi03021]
    EHI_121760 (147.t00005)
   03400 DNA repair and recombination proteins [BR:ehi03400]
    EHI_121760 (147.t00005)
Enzymes [BR:ehi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EHI_121760 (147.t00005)
Transcription machinery [BR:ehi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     EHI_121760 (147.t00005)
DNA repair and recombination proteins [BR:ehi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      EHI_121760 (147.t00005)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_6 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7 AcetDehyd-dimer
Other DBs
NCBI-GeneID: 3406089
NCBI-ProteinID: XP_651781
UniProt: A0A8U0WPB3
AA seq 1636 aa
MTELNMETKRVKQIKFTLLSSEQIRKMGVCKITESTSVSSDGKPVLGGLADPRMGPFEKG
EECQTCRGTRTECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKRIYCHGDERVKNI
KSTGEERLKEIYEFIHKNYKACGVLSEKKKDHDKHQNNEEEEEQNPCNGPIVDYELPKLK
SENKLEIRRKNGIKTNEENDFKPRDALAIFKDMTDEDVRVLGFDPIDCHPKFMIFTLIPV
PPPCVRPSIVSEGAKESKDDLTVLYENVITANERLKEENQKCEGVSEYYNKLMELQTICA
KISMKNVKLPETMLRKKNFKSIEERLSSKQGRLRLNLMGKRVDFSARTVISPDPNLSMDE
VGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPGAFMLERKNGQTYRLNGSEKIID
IGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEM
NLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIEQLVFY
NILQCLDNFDGTVPIPAILKPIPKWTGKQVFTQILPTINFHRGNWSIKELLKNGPAVADS
DVYILDGVHLVGSLRNKSEFGKNRSGIIQTIFKDKGMEATKVFFNKTQATVNSWILTRGF
TVGVGDIVVPQSVHDSIRANVEKSKKEAVKFLSHQHDDEIKVQAGNTMFENLESELGSLL
EKLKNECDSITTKSLKKDNNLLAMVDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKR
TLPHYWKEDYGFVSRGFVENSYVMGLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMV
KCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVDALMCETQKYIYCNDSKPDNFEGSINDYD
TFKMNELYKWDLNDEKLSELLDEDIYNKLFSDEYQTLFDNEFQRILDERAELYQPWRRSL
DLKPCDIHIVVNFARQIDNVIAARYLPKSQRSNLDPKYVIERENALIKELSSIGAVKNDK
FDEERFKDALGSFGKLLHCTLSSKQCLIQHHLSKESFDDLMDRIKNIYERSFINPGEMVG
SIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLKELLNVSKTPKTPSMNVYLTNDTR
ESMVDLDKELNKTIPYTKLKDLIDNVEIWFDPDIANSVIEEDREFINDFIEVEEIKPEDY
CKWTIRLVFGYNKMVSMGVDSDSDILRVKIKELFKDALVIPSDSNNIVNGTVKIVVHIRF
RVGSISECSNIDHLTDEVDKSVEAVAYYKSKLDELLRTVVISGIEGITKVIIPQKPKNAI
VVDPETKMLRDQLQWVVFTEGSNMAGLAECDNVDFYKTVTNNVYETFLYLGIEAGRTQLE
AELIKTLSGSYVNFRHLALMADVMTFTGRIQPFNRMGLSRGRAGVITRASFEQTLEQFRR
AAAFSESDILNGISQNILMGQRTVAGTGAFTVLLDIDSLKASNIDENSFSEEEADKKAFI
DGFDVSPIRTHLVMSPTNTNKPKPMGFSPSPVSPRKTHPQFATPSPFITSSSPRSSPMLM
QFTPRFSSGPSPYNPATGALSKPAFLSSPMFAGKQSSPYNNPNPSPFLGSTPAFQGISSP
FINYSSPSIFPKPQDK
NT seq 4911 nt   +upstreamnt  +downstreamnt
atgactgaactcaacatggaaacgaaacgagtcaaacaaataaaatttactttactttct
tctgaacaaatcagaaaaatgggtgtttgtaagattactgaaagtacttcagttagtagc
gatggtaaaccagttttaggtggacttgccgatcctcgtatgggaccatttgaaaaagga
gaagaatgtcaaacatgtagaggaacaaggacagaatgtcctggtcattttggatatata
gaattaacacaaccagtttataatgctatatatatgaaatatattttacatgtattaaag
tgtgtttgtccaatttgtaaacgaatatattgtcatggagatgaaagagttaaaaatatt
aaaagtactggggaagaacgattaaaagaaatttatgagtttattcataaaaattataaa
gcttgtggagttttatctgagaagaaaaaagatcatgataaacaccaaaataatgaagaa
gaagaagaacaaaatccatgtaatggaccaattgtagattatgaacttcctaaattaaaa
tcagaaaataaattagaaattagaagaaaaaatggaataaaaactaatgaagaaaatgat
tttaaaccaagagatgcacttgcaatatttaaagatatgactgatgaagatgttagagta
cttggatttgatccaattgattgtcatcctaaatttatgatttttacattaattccagta
ccaccaccatgtgttagaccatctattgtatcagaaggagcaaaagaatctaaagatgat
ttaactgtattatatgaaaatgtaataactgctaatgaaagactaaaagaagaaaatcaa
aaatgtgaaggagtatcagaatattataataaattaatggaattacaaactatttgtgca
aaaatatcaatgaaaaatgttaaacttccagaaaccatgttgagaaagaaaaattttaaa
tcaattgaagaaagactttcaagtaaacaaggtagattaagattaaatctaatgggaaaa
agagttgatttttctgccagaacagttatttcaccagatccaaatttatcaatggatgaa
gttggagtaccaacaggagttgctaaaattttaacatttccagaagtagttactcaacat
aataaagaaaaattacagaaattagttagtgctggaatgaatgattatccaggagcattt
atgttagaaagaaagaatggtcaaacatatagattaaatggatcagaaaaaattattgat
attggagatactgtgcatagatatattatgaatggagattatgttatttttaatagacaa
ccttcattacatagaatgagtatgatgggtcataaagttagagttttaccattttctaca
tttagaatgaatttatgtgatactacaccttataatgcagattttgatggtgatgaaatg
aatttgcatgtaccacaaacacttgaagcaagagctgaagttgctacattaatgttaaca
ccaacacaaattattacaccacaagataatggaccaattatgggtattgtacaagacaca
caatgtggaagttatttaattacaaaaagagaaacgtttattgaacaattagtattttat
aatattttacaatgtttagataactttgatggaacagttccaattcctgcaatattaaaa
ccaattcctaaatggactggaaaacaagtatttactcaaattcttcctactattaatttt
catagaggtaattggtcaattaaagaattattaaaaaatggaccagcagtagctgattct
gatgtatatatattagatggtgttcatttagttggatcattaagaaataaatcagaattt
ggaaagaatagatcaggtattatccaaactatttttaaagataaaggaatggaagcaact
aaagtattctttaataaaacacaagccactgttaatagttggatattaacaagaggattt
acagttggagtaggagatattgttgtaccacaatctgttcatgattctattagagcaaac
gtagaaaaaagtaaaaaagaagcagtaaaatttcttagccatcaacatgatgatgaaatt
aaagtacaagcaggaaatactatgtttgaaaatcttgaaagtgaattaggtagtttgtta
gaaaaactaaaaaatgaatgtgattctattactacaaaatcattaaaaaaagataataat
ttacttgctatggtagattcaggaagtaaaggaagtacaactaatattcttcaaatggta
gcttttgttggaaaacaagaaattaataatttaagaattccatttggattttataaaaga
accttaccacattattggaaagaagattatggatttgtttctagagggtttgtagaaaat
agttatgtgatgggattatctccacaagaatttttctttcatgctatggcaggaagacaa
ggtattattgatactgctgttaaaacatcagatactggatatattcaaagaaaaatggtt
aaatgtatggaagatgtacaatgtaaatatgatcgtacagttagaaggtctagtggagat
atggtagaatttatgtatggaggagatggagtagatgcattaatgtgtgaaacacaaaaa
tacatttattgtaatgattcaaaacctgataattttgaaggaagtattaatgattatgat
acttttaaaatgaatgaactttataaatgggatttaaatgatgaaaaattaagtgaacta
ttagacgaagatatttataataaattatttagtgatgaatatcaaacattatttgataat
gaattccaaagaatattagatgaaagagcagaattatatcaaccatggagaagaagtctt
gatttaaaaccatgtgatattcatattgttgttaattttgcaagacaaattgataatgtt
attgcagcaagatatttaccaaagagtcaaagaagtaatttagatccaaaatatgttatt
gaaagagaaaatgcattaattaaagaattatcttcaattggagctgttaaaaatgataaa
tttgatgaagaaagatttaaagatgcacttggatcatttggtaaattattacactgtaca
ttaagtagtaaacaatgtttaattcaacatcatttatctaaagaatcatttgatgattta
atggatagaattaaaaatatttatgaacgttcatttatcaatcctggagaaatggttgga
agtattgctgctcaatctattggtgcaccagcaactcaaatgactttaaatacattccat
catgcaggtatttcatctgctagtgtaactgaaggagtcccacgtttaaaagaattatta
aatgtatctaaaacaccaaagacaccaagtatgaatgtttatttaacaaatgatacaaga
gagtcaatggttgatttagataaagaattaaataaaactattccttacaccaaattaaaa
gatcttatagataatgtggaaatttggtttgatcctgatattgccaattcagttattgaa
gaagacagagaatttattaatgattttattgaagttgaagaaattaaaccagaagattat
tgtaaatggacaataagattagtatttggatataataaaatggtttctatgggagttgat
tctgattccgatattttaagggtaaaaataaaagaattatttaaagatgcattagttatt
ccatcagactcaaataatattgtaaatggtactgttaaaattgttgttcatattagattt
agagttggaagtatatctgaatgttctaatatagatcatttaactgatgaagttgataaa
agtgttgaagcagtagcatattataaatccaaattagatgaattattaagaactgttgtt
atttctggaattgaaggaattacaaaagttattattcctcaaaaaccaaaaaatgcaatt
gtagttgatccagaaacaaaaatgttaagagatcaattacaatgggtagtatttactgaa
ggatctaatatggcaggtttagctgaatgtgataatgttgatttttataaaactgttaca
aataatgtttatgaaactttcctttatttaggtattgaagcaggtagaactcaacttgaa
gcagaacttattaaaacattatctgggtcatatgttaattttagacatttagctcttatg
gctgatgttatgacatttactggtagaattcaaccttttaatagaatgggtttatcacgt
ggaagagcaggagttattactagagcttcatttgaacaaacattagaacaatttagaaga
gcagctgcatttagtgaatcagatattttaaatggtatttctcaaaatattttaatggga
caaaggactgttgcaggaactggtgcatttactgtattacttgatatagattcattaaaa
gcatcaaatattgatgaaaactcatttagtgaagaagaagctgataaaaaagcatttatt
gatggatttgatgtgtctccaattagaactcatttggttatgtctccaacaaatactaat
aaaccaaagccaatgggattctctccttccccagtttctccaagaaaaacacatccacaa
tttgctactccatcaccatttataacctcttcttctccaagatcttcacctatgttaatg
caatttacccctcggtttagttcaggtccttcaccatataatccagctactggtgcatta
tctaaacctgcatttttatcatcaccaatgtttgctggtaaacaatcttcaccttataat
aaccctaatccatcaccattcttaggttcaacacctgcgttccaaggtatttcatcacca
tttattaattactcatcacctagtatattccctaaaccgcaagataaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (75)   

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