KEGG   Escherichia coli clone D i14: i14_3725
Entry
i14_3725          CDS       T02003                                 
Symbol
yrdC
Name
(GenBank) putative ribosome maturation factor
  KO
K07566  L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
Organism
elc  Escherichia coli clone D i14
Brite
KEGG Orthology (KO) [BR:elc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:elc03009]
    i14_3725 (yrdC)
   03016 Transfer RNA biogenesis [BR:elc03016]
    i14_3725 (yrdC)
Enzymes [BR:elc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.87  L-threonylcarbamoyladenylate synthase
     i14_3725 (yrdC)
Ribosome biogenesis [BR:elc03009]
 Prokaryotic type
  Other maturation factors
   i14_3725 (yrdC)
Transfer RNA biogenesis [BR:elc03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    i14_3725 (yrdC)
 Prokaryotic type
    i14_3725 (yrdC)
SSDB
Motif
Pfam: Sua5_yciO_yrdC
Other DBs
NCBI-ProteinID: AER91177
Position
complement(3733268..3733885)
AA seq 205 aa
MPVNNVESRFRRNNNVNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMR
LLELKRRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATTPR
WLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVV
PGETGGRLNPSEIRDALTGELFRQG
NT seq 618 nt   +upstreamnt  +downstreamnt
gtgccagtaaacaatgtggaaagccgatttcggcggaataataacgtgaataataacctg
caaggagacgctatcgcagctgcgatagatgtcctcaatgaagaacgtgtcatcgcctat
ccaacggaagccgttttcggtgtcgggtgcgatcctgatagcgaaacagcagtgatgaga
ctgttggagttaaaacggcgtccggttgataaggggctgattttaatcgcggcaaattac
gagcagcttaaaccctatattgatgacaccatgctgactgacgcgcagcgtgaaaccatt
ttttcccgctggccaggtcctgtcacctttgtctttcccgcgcctgcgacaacaccgcgc
tggttgacgggccgctttgattcgcttgctgtacgagtcaccgaccatccgttggtggtt
gctttgtgccaggcttatggtaaaccgctggtttctaccagtgccaacttgagtggattg
ccaccttgtcgaacagtagacgaagttcgcgcacaatttggcgctgcgttcccggttgtg
cctggtgaaacgggggggcgtttaaatccttcagaaatccgcgatgccctgacgggtgaa
ctgtttcgacaggggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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