KEGG   Esox lucius (northern pike): 105022889
Entry
105022889         CDS       T04894                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
els  Esox lucius (northern pike)
Pathway
els03040  Spliceosome
els04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:els00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105022889 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105022889 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:els03041]
    105022889 (prpf19)
   04121 Ubiquitin system [BR:els04121]
    105022889 (prpf19)
   03400 DNA repair and recombination proteins [BR:els03400]
    105022889 (prpf19)
Enzymes [BR:els01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105022889 (prpf19)
Spliceosome [BR:els03041]
 Complex B
  Other components
   Prp19 complex
    105022889 (prpf19)
 Complex C
   Prp19-CDC5 complex
    105022889 (prpf19)
Ubiquitin system [BR:els04121]
 Ubiquitin ligases (E3)
  U-box type E3
   105022889 (prpf19)
DNA repair and recombination proteins [BR:els03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    105022889 (prpf19)
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box PROPPIN Nup160 Cytochrom_D1 RMC1_N Cep57_MT_bd ATG16 zf-Nse Smoa_sbd T3SSipB
Other DBs
NCBI-GeneID: 105022889
NCBI-ProteinID: XP_010889939
UniProt: A0A3P8YWY9
Position
LG25:13563224..13570629
AA seq 505 aa
MSLFCAISNEVPEHPCVSPVSNQVFERRLIEKYIVENGTDPMNGQPLSEEQLIDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVVAQAISAQPSVTAGGAADAMEVSEQVGMTMDIIQKLQDK
ATVLTTERKKRGKTVPEELVRSEDLGKYRQVATHAGLHSASVPGILSLDLCPADTNKVLT
GGADKNVVVFDKKEEQIVATLKGHTKKVTSVIFHPSQSVVFSASPDSTIRVWSVTGGNCV
QVIRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHTGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQWSEVLNFTEHTGVVT
GVAFGEHAQFLTSTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtcactgttttgtgcaatctccaatgaggtcccggagcatccgtgcgtgtcaccggta
tcaaaccaggtgttcgagcggcgtctgatcgagaagtacatcgtggagaatggaacagac
cctatgaatggacagcctctgtctgaggaacaactaatagatattaaagtctctcacccc
atcagacccaaggctccctcggccaccagtatcccagccatcctcaagtctctgcaggac
gagtgggatgctgtgatgctccacagtttcacactgagacagcaactgcagaccacacgc
caggagctaagccacgccctctaccagcacgacgccgcctgcagggtcatcgctcgtctc
accaaggaggtcactgctgccagggaggctctggccactttgaagccacaggcgggtctg
gtggtggcccaggcaatcagtgctcagccttccgtcacggcgggaggagctgcagacgcc
atggaagtcagcgagcaggtgggaatgacgatggacatcatccagaagctccaagacaag
gccaccgtcctgaccacggagaggaagaagagaggaaagaccgttccggaagagctcgtc
cgatcggaggacctcgggaagtacagacaagtggctacccatgctggtctccacagtgcc
agtgttccagggatcctgtctctagatctttgtccagccgacaccaacaaagtgctcact
ggtggggctgataagaatgtggtggtgtttgataagaaggaggagcagattgttgccacc
ctgaagggacacaccaaaaaggttacctcagtcatctttcacccctctcagtcggttgtg
ttctcggcctctccggacagcaccatccgcgtgtggtcagttacggggggcaactgtgtc
caggtgatacgggctcacgaggccggcgttaccgggctctcgctccacgctaccggagac
tacctgctcagttcctccgaggaccagtactgggccttctctgacatccagacgggtcgt
gtcctcaccaaggtcaccgacgaggcagcgggatgtgctctgacctgtgcccagttccac
ccggacggtctgatcttcgggacgggcacggctgactctcagatcaagatctgggacctg
aaggaacgcaccaacgtggccaatttccccggccacaccgggcccgtcacctccatcgcc
ttctctgagaacggatactacctggccacaggagcccaggacagctcagtgaagctgtgg
gatttgaggaaactgaagaacttcaagaccatcaccctggacaacaactatgaagtgaag
tctctggtgttcgaccagagtggcacgtacctggctgtcggtggcacggacattagggtc
tacatctgcaagcagtggtccgaggtgctcaactttacagaacacaccggggtggtgact
ggtgtggcgttcggggagcacgcccagttcctcacctccaccggaatggacaggagcctg
aagttctacagcctgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (64)   

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