KEGG   Escherichia coli W: ECW_m4080
Entry
ECW_m4080         CDS       T02002                                 
Symbol
rho
Name
(GenBank) transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
elw  Escherichia coli W
Pathway
elw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:elw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ECW_m4080 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:elw03021]
    ECW_m4080 (rho)
   03019 Messenger RNA biogenesis [BR:elw03019]
    ECW_m4080 (rho)
Transcription machinery [BR:elw03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ECW_m4080 (rho)
Messenger RNA biogenesis [BR:elw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ECW_m4080 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: ADT77405
UniProt: E0J410
Position
4190850..4192109
AA seq 419 aa
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaacctggctcgcatgcgtaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggtgatggtgtactggagatattgcaggat
ggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctac
gtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaac
ttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggaacgtggtaacggttctacggaagatttaaccgctcgc
gtactggatctggcatcacctatcggtcgtggtcagcgtggtctgattgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacattgcccagagcattgcttacaaccacccg
gattgtgtgctgatggttctgctaatcgacgaacgtccggaagaagtaaccgagatgcag
cgactggtaaaaggtgaagttgttgcttctacctttgacgaacccgcatctcgccacgtt
caggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcacaagaaagacgtt
atcattctgctcgactccatcacccgtctggcgcgtgcctacaacactgtcgttccggcg
tcaggtaaagtgttgaccggtggtgtggacgccaatgccctgcatcgtccgaaacgcttc
ttcggtgcggcgcgtaacgtggaagagggcggcagcctgaccatcatcgctaccgcgctt
atcgataccggttccaagatggacgaagttatctacgaagagtttaaaggtacaggcaac
atggaactgcacctttctcgtaagattgctgaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagaactgctcactactcaggaagaactgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatggaattcctcatt
aataaactggcaatgaccaagaccaatgacgatttcttcgaaatgatgaaacgctcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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