KEGG   Encephalitozoon romaleae: EROM_040240
Entry
EROM_040240       CDS       T03458                                 
Name
(RefSeq) RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit SSL1
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
ero  Encephalitozoon romaleae
Pathway
ero03022  Basal transcription factors
ero03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ero00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    EROM_040240
  09124 Replication and repair
   03420 Nucleotide excision repair
    EROM_040240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ero03021]
    EROM_040240
   03400 DNA repair and recombination proteins [BR:ero03400]
    EROM_040240
Transcription machinery [BR:ero03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     EROM_040240
DNA repair and recombination proteins [BR:ero03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     EROM_040240
SSDB
Motif
Pfam: Ssl1 Tfb4 C1_4 HMBD zf-HIT
Other DBs
NCBI-GeneID: 20521088
NCBI-ProteinID: XP_009264290
UniProt: I6ZHV6
Position
IV:22578..23600
AA seq 340 aa
MAKQFSWEQEYKRTWEDRSDKKVHEFNMEAETFYSNNRKGIVRHLHVIIDVSEAIDKSDF
LPTFRTNVARILEEFIPSFYNENPLSTLSFLSTRDVCVKYISSMDMDVHAFLGQTGSKWF
SLLNGLEGSIEIMRNTMHVKEILVIVASTSTRDPHGYTEVLNKLKTYNIKVHFISLCGEL
TLYKSISKATGGRFYVPVDVGHLSMIMKELSHPTDFNGTTLSLVKIGFPLPTIESSVCSC
HLEMKSIGYECPVCKTMVCSLPTSCPICGTQLVSTLNLSKSLRFLYPLKPFIEKAEGICR
ICRDKGAYQCELCKSTFCSYCNGLAHNTLSFCIYCELPHN
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggccaagcagttttcttgggaacaggaatacaaaagaacatgggaggacagaagcgat
aaaaaggtccatgagtttaacatggaggctgaaactttttatagtaataatagaaagggg
atagtgagacatcttcatgtcataatagatgtttcagaggcaatagacaagtcggacttt
cttcccacgttcaggacaaatgtggcaagaattcttgaggaattcattccgtcattctat
aatgagaatcctctgtcgaccctctcctttcttagtactagagatgtctgtgtgaagtat
ataagcagcatggatatggatgttcatgcatttcttggccagacaggatccaaatggttt
tcactgctcaatggacttgagggatccatagagatcatgaggaacaccatgcacgtaaag
gagattcttgtaattgttgcaagcacatccaccagagacccccatggatacaccgaagta
ctgaataagctcaagacgtataacataaaggtccacttcataagtctgtgcggcgagctc
actctatataaatcaatatctaaggccactggtggaagattttatgtcccggttgatgtg
gggcatctatctatgatcatgaaggagctgtcccatcccacggacttcaatgggacaacc
ctcagtctggtcaaaataggctttcccctgccaacaatagaatcctcggtatgtagttgc
catctggagatgaagagcattggatatgaatgcccagtgtgcaagacgatggtttgctct
cttcctacttcatgtccaatatgtggcacccaacttgtatccacattgaatctctccaag
tccttaaggttcctttatccactaaagccatttattgaaaaggcagaaggtatatgcaga
atatgccgagacaagggtgcatatcaatgcgagctctgcaaaagcacgttctgcagctac
tgcaatggactcgctcataacactttaagtttctgcatctactgtgaattaccacataat
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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