KEGG   Agathobacter rectalis DSM 17629: EUR_00400
Entry
EUR_00400         CDS       T02587                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ert  Agathobacter rectalis DSM 17629
Pathway
ert03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ert00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EUR_00400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ert03021]
    EUR_00400
   03400 DNA repair and recombination proteins [BR:ert03400]
    EUR_00400
Enzymes [BR:ert01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EUR_00400
Transcription machinery [BR:ert03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EUR_00400
DNA repair and recombination proteins [BR:ert03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EUR_00400
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: CBK89297
Position
41193..45041
AA seq 1282 aa
MPETNNIENNQAMQFDAIQIGLASPEKIREWSHGEVKKPETINYRTLKPEKDGLFCEKIF
GPTKDWECHCGKYKKIRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVSHIWYFKGIPS
RMGLILDLSPRVLERVLYFASYIVLDPGETKLAYKQILNESEYQEACDTYGRSAFRVGMG
AESIRELLAAIDLEKDSAELKAELENATGQKRARIIKRLEVVEAFRESGNKPEWMIMTVI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLDLGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRALKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVICVEPKLK
IYQCGLPKEMAIELFKPFVMKELAANGTAHNIKSAKKMVERLQPEVWDVLEDVIKEHPVM
LNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLTAEAQAECRF
MLLSPNNLLKPSDGGLVAVPSQDMILGVYYLTMRKLADYKDDPKMVAQVSSDTVYNDIEE
LRKLTTPDENTGKAELGLYDLIWFEDVTDGNRRVLCRPIDLLGRYYGSVNLAMLAYENKE
ITLHQNIFVHRTVKLPDGTEVSGFTETTVGLLIFNENIPQDLGFIDRSKAENALKFEVEF
HVGKKQIKQILEKVINTHGATTTAEVLDNVKAMGYKYSTQAAMTVSISDMTVPPQKPQMI
ADAQDTVDKITRQYKRGLITDEERYKEVIETWKDTDDALTKALLTGLDKYNNIFMMADSG
ARGSDKQIKQLAGMRGLMADTTGRTIELPIKSCFREGLDVLEYFMSAHGARKGLSDTALR
TADSGYLTRRLVDVSQHMIVRETDCCAGTGREIPGMVVKAFMEGREEIESLQERITGRFS
CNTICDKDGNVIVKANHMITPKRAAKVMAEGVDENGNPITQVKIRTVLTCRSHMGVCAKC
YGSNLATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVEEIFEA
RKPKGLAIITEFGGTATIKDTKKKREVIVTNNETGETKAYLIPYGSRIKVVDGQELEAGD
ELTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHVEVIVRQCLQKIRVEE
PGDSDLLPGSMVDALDFLELNEKLEEEGKELAVGSQVLLGITKASLATNSFLSAASFQET
TKVLTEAAIKGKVDPLIGMKENVIIGKLIPAGTGMKIYRNIKLDSDVNDDDTLDFDDDDF
ADFAEEEAVGVIDTDAESVDEE
NT seq 3849 nt   +upstreamnt  +downstreamnt
atgccagaaacaaataatatagaaaataatcaggcaatgcagtttgatgcgattcagatt
ggattagcatctcctgaaaagatcagagagtggtcacatggcgaggttaaaaagcctgag
actattaactatagaacattaaagcctgaaaaagacggtcttttctgcgagaagattttc
ggaccaacgaaggactgggagtgtcattgtggtaaatacaagaagatacgttataagggt
gttgtctgcgaccgatgtggcgtagaaatcacaaagtcaagcgttcgtagagagcgtatg
ggacacatcgagcttgctgctcctgtatctcatatctggtatttcaagggtatcccatca
cgtatgggactcatccttgacttatctccacgtgtacttgagagagtactgtactttgct
tcatatattgtgcttgacccgggcgagacaaagcttgcatacaagcagattctcaatgag
tcagagtaccaggaggcatgcgatacttatggccgctcagcattccgtgtaggaatgggt
gctgagtctatccgtgagcttttagcagcaatcgatctcgagaaggattcggcagagctt
aaggcagagcttgagaatgctacaggccagaagcgtgcacgtatcatcaagagacttgag
gttgtagaggctttccgtgagtcaggaaacaagcctgagtggatgattatgacagttatt
cctgttatcccgccggatcttcgtccaatggttcagctcgatggaggacgttttgcaaca
agtgatcttaacgacctttacagacgaattatcaaccgtaacaaccgtcttagaagactt
cttgatcttggagctccggatattatcgttcgtaacgagaaacgtatgcttcaggaggct
gtcgatgcacttatcgacaatggccgtcgtggccgtcctgttaccggtcccggaaacaga
gctcttaagtctctttcagacatgctcaagggaaagggaggacgtttccgtcagaacctt
ctcggaaagcgagttgactactcgggacgttcagttatctgtgtagagccaaagcttaag
atttatcagtgtggtcttccaaaggagatggctatcgagcttttcaagccattcgttatg
aaggagcttgccgctaacggaaccgcacacaacataaagagtgcaaagaagatggttgag
agacttcagccggaggtatgggatgtccttgaggatgtcatcaaagagcatccggttatg
cttaaccgagctcctacactccacagacttggaatccaggctttcgagccaatccttgta
gagggtaaggcaatcaagcttcatccactcgtatgtacagcgttcaacgccgacttcgat
ggagaccagatggctgtacatcttccactgactgctgaggcacaggctgagtgcagattc
atgcttctgtcacctaacaacctgcttaagccttctgatggtggacttgtagccgttcct
tcacaggatatgatccttggagtttactacctcacaatgagaaagctcgctgattacaag
gatgatccaaagatggttgcacaggtgtcatcagacactgtatacaatgatattgaggag
cttagaaagctcacaactcctgatgaaaatacaggaaaggctgagcttggcttatatgac
ctcatctggtttgaggatgttacagacggaaaccgtcgtgtgctttgcagaccgatagat
cttctcggccgttactatggaagtgttaatcttgcaatgctcgcttacgagaacaaggag
attactcttcaccagaatatctttgtacaccgtacagtaaagcttcctgacggcacagag
gtttcaggttttacagagacaacagtaggacttttgatattcaatgagaacattccacag
gatcttggttttatagacagatcaaaggctgagaatgcactcaagtttgaggttgagttc
cacgttggtaagaaacagatcaagcagatccttgagaaggttatcaacacacacggagct
acaacaacagcagaggttcttgataatgtcaaggctatgggatacaagtattcaacccag
gctgccatgacagtttcaatttcagatatgacagtgccaccacagaagccacagatgatc
gctgatgcacaggacactgtagataagattacaagacagtacaagcgtggacttatcact
gatgaggagcgttacaaagaggttatcgagacatggaaggatacagatgatgcccttaca
aaggcacttcttacaggtcttgataagtacaacaacatcttcatgatggcagattccgga
gcccgtggatctgataagcagatcaaacagcttgcaggtatgcgaggactcatggctgat
acaacaggtcgtacaatcgagcttcctatcaagtcatgcttccgtgagggtcttgacgta
ctcgagtacttcatgtcagcacatggagctcgtaagggactttcagatacagcgcttcgt
acagccgattcaggataccttacaagacgtctcgtagatgtttcacagcatatgatcgtt
cgtgagacagactgctgtgcaggcacaggacgtgagattccgggaatggttgtaaaggca
ttcatggagggtcgagaggaaatcgagagccttcaggagagaattacaggtcgtttctct
tgcaatacaatctgcgataaggatggcaatgtaatcgttaaggccaaccatatgattaca
ccaaagcgtgcagcaaaggttatggcagagggtgttgacgagaatggtaatccaatcaca
caggttaagatccgtacagtgcttacctgccgttcacacatgggagtatgtgctaagtgt
tacggttcaaaccttgcaacaggtcaggcagtacaggttggtgaagcaatcggtatcatc
gcagcacagtcaatcggtgagcctggtacacagcttaccatgagaaccttccatacaggt
ggtgttgccggtggagatatcacacagggtcttcctcgagtagaggagattttcgaggca
cgtaagcctaagggactcgctattatcacagagttcggcggaactgccacaatcaaggat
acaaagaagaaacgtgaggttatcgttacaaacaacgagacaggcgagacaaaggcttac
ctcattccttacggctcacgtatcaaggttgtagacggacaggagcttgaggccggcgac
gagcttacagagggttctgtaaatccacacgatatcctcaagattaagggcgttcgtgcg
gttcaggattacatgctccgcgaggtacagcgtgtttaccgtttacagggtgttgagatt
aacgataagcatgtcgaggttatagttcgtcagtgcttacagaagatccgcgtagaggag
ccgggagattctgatttacttccgggcagcatggttgatgcccttgacttcttagagctc
aacgagaagcttgaggaagagggcaaggagcttgcagttggctcacaggtattacttgga
atcacaaaggcatctcttgcaaccaactcattcctgtcagcagcttcattccaggagacc
acaaaggttcttactgaggcagcaatcaagggcaaggttgatccgcttatcggtatgaag
gagaacgtaatcatcggtaagctcatcccggcaggaacaggtatgaagatttatcgtaat
atcaagcttgacagcgatgtaaacgatgatgatacacttgattttgatgatgatgatttt
gcggatttcgcagaggaagaggcagtcggagtcattgatacagatgctgaatcagttgat
gaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system