KEGG T02509: ETAC

Edwardsiella piscicida C07-087: ETAC_09825

Entry

ETAC_09825        CDS       T02509

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

etc Edwardsiella piscicida C07-087

Pathway

etc03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:etc00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ETAC_09825
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:etc03400]
    ETAC_09825
Enzymes [BR:etc01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ETAC_09825
DNA repair and recombination proteins [BR:etc03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      ETAC_09825

SSDB

Motif

Pfam:

UvrB_inter DEAD MFD_D3 TRCF Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C dATP-dGTP_PPHyd

Other DBs

NCBI-ProteinID:

AGH74086

Position

2230114..2233575

AA seq 1153 aa
MSEQYRLTLPERYPLPARAGDVRQLGQLSGSACALECAEIAERHAGPVMLVVPDMQTALR
LRDEIPQFSRQWVTTLADWETLPYDSFSPHQDIISARLSCLYHLPGMERGIIILPINTLM
QRVCPHSFLHGHALVMKKGQRLSRDVLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPM
GSDEPYRIDFFDDEIDSLRLFDVDSQRTLNEVERIDLLPAHEFPTDQTAIELFRSQWREH
FEVRRDAEHIYQQVSKRIWPAGIEYWQPLFFNQPLPTLFSYLPAGTLLLGLGDLHQAAER
FWQDIEQRRASRGIDPMRPLLPPESLWMRVDELFAALKQWPRIQLTRDALDDHAGHTNLH
YQPLPTLAVEAQSKKPLANLQRFLAEFSGSVVFSAESEGRRETLLELLARIQVAPRLIAR
LEEAEPGGRYIMVGASEHGFINVPLALALICESDLLGERVSRRRQDSRRTINTDTLIRNL
AELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYAGDAKLYVPVSSLHLLSRYAG
GADDSAPLHRLGGDAWTRARQKAAEKVRDVAAELLDIYAMRAAKAGFAFRHDREAYQLFC
QGFPFETTADQEIAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTADGKVDILIGTHKLL
QNDVQWSDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPARRMAVKTFVREYDSLVVREAILRETLRGGQVYYLYNDVDTIQKAADRLATLVP
EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLA
QLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQMASVGFSLYMELLESAVTALKEGREPSLEDLTSQQTEVELRMPTLLPE
EMIPDVGTRLSFYKRIASASDGDTLADLRAELIDRFGALPDAARNLLQCAALRQQAAALG
IRRIEGHDKGGFIEFSEKNHVDPLYLIGLLQQQPGVFRLDGPSKLKFICDLSERQARLAF
VERLLADFAEHRI

NT seq 3462 nt +upstreamnt +downstreamnt
atgtctgaacaataccgtcttaccctgccagaacgttacccgctgcccgcgcgcgcgggc
gacgtccgccaactgggccaactgagcggctccgcctgcgcgctggagtgcgccgaaatc
gctgagcggcacgccggccccgtgatgctggtggtgcccgacatgcagaccgccctgcgc
ctgcgcgacgaaattccccagttcagccgccagtgggtcacgaccctggccgactgggag
acgctgccctacgatagcttctcgccgcaccaggatatcatctccgcccgcctctcctgc
ctctaccatctgccggggatggagcgcgggatcatcatactgccgatcaatacgctgatg
cagcgcgtctgcccgcacagtttcctgcacggacacgcgctggtgatgaaaaaggggcag
cgcctgtcgcgcgatgtcctgcgcgcccagctggagcaggcgggctaccgcagcgtggat
caggtgatggagcacggggagttcgcgacccgcggcgccctgctcgacctgttcccgatg
ggcagcgacgaaccctatcgcatcgactttttcgacgatgagatcgacagcctgcgcctg
ttcgacgtcgacagtcagcgcaccctgaacgaggtcgagcgcatcgatctgctgccggcc
cacgagtttcccaccgatcagacggccatcgaactgttccgcagccagtggcgcgaacac
tttgaggtgcgccgtgacgccgagcacatctaccagcaggtcagtaaaaggatctggccc
gccgggatcgaatactggcagccgctgttctttaaccagccgctgccgacgctgttcagc
tacctgccggcgggtacgctgctgctggggctgggcgatctgcaccaggccgccgaacgc
ttctggcaggacattgagcagcgccgggccagccgcggcatcgacccgatgcgtccgctg
ctgccgccggaaagcctgtggatgcgcgtggatgaactgtttgccgccctcaagcagtgg
ccgcgcattcagctgacccgcgacgcactcgacgaccacgccggtcacaccaacctgcac
taccagccgctgccgaccctggcggtagaggcgcagagcaagaagcccctggctaatctg
cagcgcttcctggcggagtttagcggcagcgtggtgttcagcgcagaaagcgaaggccgc
cgcgaaaccctgctggagctgctggcgcgcattcaggtggcgccgcggctgatcgcccgg
cttgaggaggccgagcccggcggtcgctacatcatggtcggcgccagcgagcacggtttt
atcaacgtaccgctggcgctggcgctgatctgcgaaagcgatctgctcggcgagcgcgtt
agccgccgtcgccaggatagccgccgcaccatcaacaccgatacgctgatccgcaacctg
gcggagctgacgcccggtcaaccggtcgtacacctggagcacggcgtgggccgctacggc
gggatgaccaccctggaggcgggcgggatcaagggcgaatacctgatcctcagctacgcc
ggcgacgccaagctgtacgttccggtctcctcgctgcacctgctcagccgctacgccggc
ggtgccgatgacagcgcgccgctgcaccgcctgggcggcgatgcctggacccgcgcccgg
caaaaggccgcggaaaaggtgcgcgacgtggcggccgagctgctggatatctatgcgatg
cgcgccgccaaggcggggtttgccttccgtcacgaccgcgaggcctaccagctgttctgt
caaggtttcccgtttgaaaccaccgcggatcaggagatcgccatcaacgcggtgctcagc
gacatgtgccagccgctggccatggatcgcctggtgtgcggcgacgtcggcttcgggaaa
accgaagtggccatgcgcgccgccttcctggcggtgcacagcggcaagcaggtggcggtg
ctggtgccgaccaccctgctggcccagcagcactacgataacttccgcgaccgcttcgcc
aactggccggtgcgcattgagctgatctcccgtttccgcagcgccaaagagcaggcgcag
gtgctggcggacaccgccgacggcaaggtcgatattctgatcggcacccacaagctgctg
cagaacgacgtacagtggagcgatctggggctgctgatcgtcgacgaagagcaccgcttc
ggcgtacgccagaaggagcgcatcaaggcgatgcgcgccgatgtggatattctgacgctc
acggcgacgccgatccctcgcaccctgaacatggccatgagcggcatgcgcgatctctcc
atcatcgccaccccgccggcgcggcgcatggcggtaaagacctttgtccgcgaatatgac
agtctggtggtgcgcgaggccattctgcgtgaaaccctgcgcggcggtcaggtgtactac
ctgtacaacgacgtcgacaccatccagaaagccgccgatcgcctggcgaccctggtgccg
gaggcgcgcatcgccatcggccacgggcagatgcgcgagcgcgagctggagcgggtgatg
aatgattttcaccaccagcgctttaacgtattggtctgcaccaccataatcgaaaccggt
atcgatattcccagcgccaacaccatcatcattgagcgagcggaccactttggcctggcg
cagctgcaccagctgcgcgggcgcgtcgggcgctcgtatcatcaggcctatgcctacctg
ctcaccccaccgcccaaggcgatgaccgtcgatgcgcagaagcggctggaggcgattgcc
tcgctggaggatctcggcgccggctttgccctggcgacgcacgatctggagatccgcggc
gccggcgagctgctgggggacgatcagagcggtcagatggccagcgtaggcttctcgctg
tatatggagctgctggaaagcgcggtcacggcgctgaaagaggggcgcgaaccctccctg
gaggatctcaccagccagcagaccgaggtggagctgcgtatgcctaccctgctgccggag
gagatgatccccgacgtcggcacccgtctctctttctacaagcgtatcgccagcgccagc
gatggggataccctcgccgacctgcgcgcggagctgatcgatcgcttcggggcgctgccc
gatgcggcgcgtaacctgctgcagtgcgccgcactgcgccagcaggccgcggcgctgggg
atccgccggattgaggggcacgataaggggggattcatcgagttcagcgaaaagaaccac
gtcgatccgctgtatctgatcggcctgctgcagcagcagccgggcgtcttccgactggat
ggccccagtaagctgaagttcatctgcgatctcagcgagcgtcaggcgcgcctcgccttc
gtcgagcgtctgctggccgacttcgccgaacatcgcatctag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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