KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10006525mg
Entry
EUTSA_v10006525mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10006525mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10006525mg
Enzymes [BR:eus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     EUTSA_v10006525mg
Spliceosome [BR:eus03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    EUTSA_v10006525mg
 Complex C
   U5 SnRNP specific factors
    EUTSA_v10006525mg
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 T2SSE AAA_11
Other DBs
NCBI-GeneID: 18992838
NCBI-ProteinID: XP_006416344
UniProt: V4KXA6
Position
Unknown
AA seq 2160 aa
MANLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPNSFGDRVA
KGRPQELEDRLKKSKKKERDVVDDTVSNRQSKRRRLREESVLTDTDDVVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNETVKNIEKKIEIEKLLNPISNQDFDQL
VSIGKLITDFQEGGDSGGGKASEDEGLDDDLGVAVEFEENEEDDEESDPDMVQEEDDEED
EEPQRTGSMQVGAGINDEDAGDANEGTSLNVQDIDAYWLQRKISQAYEQQIDPQHCQVLA
EELLKILAEGDDRDVENKLLVHLQFEKFSLVKFLLRNRFKVVWCTRLARAEDQEEKNRIE
DEMRGLGPELAAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDVADK
DLESGWLKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHAKGYDEVHVPWVSKKVD
INEKLVKITEMPVWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLT
ILQQLEMNRNPDGTYNHGDYKIVYVAPMKALVAEVVSNLSNRLKDYGVTVRELSGDQSLS
GKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTL
RQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKK
PLQRFQLMNDICYQKVLAGAGKHQVLIFVHSRKETAKTANAIKDTAMANDTLSRFLKEDS
VSREVLQSQIDIIKNSDLKKLLPYGFAIHHAGLTRGDREIVESLFAEGHVQVLVSTATLA
WGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQSGEGIIITGYSEL
QYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLY
GLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHG
TIATFNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPS
AKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSK
MVGKRMWSVQTPLRQFHGIPNDILMKLEKKDLVWERYYDLSSQELGELIRSPKMGRPLHK
FIHQFPKVNLAAHVQPITRTVLKVELTITPDFQWDEKIHKYVEPFWIIVEDNDGEKILSS
RDHTISFTVSIFEPLPPQYFIRVISDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPL
PVTALRNPDYERLYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILKNH
QEGSDATMRVVYIAPLEAIAKEQFRIWERKFGKGLGLRVVELTGETTLDLKLLEKGQIII
STPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGHGGTVLEVIVSRMRYISSQGDNKIR
IVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPT
YTAIVQHAKNNKPAIVFVPTRKHVRLTAVDLMAYSHMDNSQSPDFLLGKLEELEPFVSQI
REETLKETLRHGVGYLHEGLCSMDQEIVTQLFEAGRIQACVMSSSLCWGTPLTAHLVVVM
GTQYYDGRENSHSDYPVSDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPV
ESHLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRHLSDH
LSELVENTLSDLEASKCIEIEDEMDLSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKG
LVEILTSASEYDTIPIRPGEEDAVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQSI
SGNLAMDQREVLLSATRLLQAIVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLP
HFTKDLAKRCQENPGKSIETVFDLVEMEDEERQELLKMKDSELLDIARFCNRFPNIDLTY
EVVGSEEVTPGKEVTLQVMLERDMEGRTEVGPVDAPRYPKTKEEGWWLVVGDTETNQLLA
IKRVSLQRKLKVKLDFAVPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKESGAGDHMEE
NT seq 6483 nt   +upstreamnt  +downstreamnt
atggcgaacttgggaggcggtgcggaagcgcatgccaggttcaagcagtatgagtacaga
gccaattctagtctggtgctaaccactgacaatcgtcctcgcgacacgcatgaacccaca
ggagagccggaaactctatggggtaaaattgatcccaattcctttggagaccgcgttgcc
aagggaaggcctcaggagctggaggataggcttaaaaagtcgaagaagaaggaacgtgat
gttgtggatgacacggtttctaatcggcagagcaagaggcgtcgccttagagaagagagt
gtgctcacagatacggatgatgtggtttatcagcccaagactaaggagacaagggctgct
tacgaggccatgctcagtcttattcagcagcagttgggtgggcaacctctgaatattgtt
agtggtgcggcagatgagatcttggctgttctcaagaacgaaacagtaaaaaacattgaa
aagaagatcgagatcgagaagttgctgaaccctatttctaatcaggattttgatcagctt
gtttccattgggaaattgatcactgactttcaagagggtggggattctggtggtggtaaa
gcgagtgaggatgaagggcttgatgatgacctcggtgtggctgttgaatttgaggagaat
gaagaagacgatgaggagagtgatcccgatatggtccaggaggaagacgacgaggaggat
gaggaacctcagagaactggaagtatgcaggtgggtgcagggataaatgacgaggatgca
ggagatgcgaatgagggcacgagtctgaacgttcaggacattgatgcctattggctccag
agaaagatatcccaagcttatgaacagcagattgatccacaacactgccaggtgctcgca
gaagagctgcttaagatactcgctgaaggggatgatagggatgtggagaacaagctactt
gtgcaccttcagtttgaaaagtttagccttgttaaatttctgctgcggaaccgctttaaa
gttgtgtggtgcacccgtttggctagggcagaagaccaggaagagaagaatcgaattgaa
gacgagatgaggggtttgggcccagagttggcggcaattgtggagcagttgcatgccaca
agagcgacagccaaagagagggaggagaaccttcagaaaagtattaatgaagaagcccgg
cgtttgaaggacgaaactggtggagatggaggcagaggcaggagagatgttgctgataaa
gatttagagagtggttggttgaagggtcagcgtcagatgctggacctggagagcttggcc
tttgaccaaggtggtctcctgatggcgaataagaagtgtgaccttcccccgggctcttac
agaagtcatgccaagggatatgatgaagttcatgtgccatgggtttctaaaaaggtggat
atcaatgagaagcttgtgaagatcaccgagatgccagtttgggctcaaccggcttttaag
ggaatgcaacaattgaacagggttcagagcaaagtgtatgacactgcgctgtttaaggca
gagaacattcttctttgtgctccaactggtgctggaaaaaccaatgttgctatgctcacc
attctgcagcaacttgaaatgaacaggaacccagatggaacatataatcatggagattac
aaaattgtctatgttgcacccatgaaagcgcttgttgctgaggtcgtcagtaatttgtct
aatcgtctgaaggattatggagttactgtgagggaactcagtggggatcagtcccttagt
gggaaagaaattgaggagactcagataattgttacaactccagaaaagtgggatatcatt
actaggaagtctggggatcgcacttatactcagcttgtgagacttcttataatcgatgaa
attcatcttcttcatgataatcgagggcctgtgcttgaaagcattgtcgctaggactctt
aggcagattgaaaccacgaaggaaaatattcgtctggtgggtttatcggctacactgcca
aattacgaagatgtggccttatttttgcgggttgatcttaagaaagggttgtttaaattt
gaccgcagctacagacccgtacctctccatcagcagtatattggaatcagtgtgaaaaaa
ccgttgcaaaggttccagttgatgaatgatatatgttatcagaaagtattggctggtgct
ggaaagcaccaggtccttatttttgttcattcgaggaaggaaacagcaaaaactgcaaac
gcaataaaggacaccgcaatggcgaacgataccctcagcagattcttgaaggaagatagt
gtaagtcgtgaagtacttcagagtcagattgacattattaagaacagtgacctgaaaaag
cttctgccttacggttttgctattcatcatgctgggttaacaaggggtgatcgtgagata
gttgagtcgctttttgctgaaggacatgtgcaagtcttggtttccacagcaacccttgca
tggggtgtgaatttgcctgcacatactgtcattatcaaaggaacccaggtctataatcct
gagaaaggggcttggatggaactgagtcctctggatgttatgcagatgcttggtcgtgct
ggaagacctcagtatgatcaaagtggggagggtataattatcactggctacagcgagctg
cagtattatctttctttgatgaatgagcaactacccattgaaagccagtttatttccaaa
cttgctgatcagcttaatgctgaaattgtgcttggaaccgttcagaatgctagagaggct
tgccattggcttggctatacatatttatatatccgtatggttcgtaatccaacgctctat
ggcttagcgcctgatgcccttgcaaaagacgtagtattggaggagagaagagctgacctg
atacattcggctgctactatcttggacaaaaacaacttggttaagtatgacagaaaaagt
ggatacttccaagttactgatttgggacgcattgctagctactactacataacccatggg
accatagctacattcaatgagcatttgaagccaacgatgggtgatatagatctttatcga
ctattttcactgagtgaggagttcaagtatgtgactgttcggcaagatgagaagatggaa
ctggcaaaacttttggatcgtgtaccgattccgatcaaggaaactctggaggagcccagt
gcaaagattaatgttttgctacaggcttatatttcacagctaaagcttgagggcctttct
ttgacatcagacatggtttatataactcagagtgctggacgtcttgtacgagctctctat
gaaattgtattgaagcggggatgggctcaactggctgagaaagctctgaacttgtctaaa
atggttgggaagaggatgtggagtgtccagacaccccttcgtcagtttcatggaattccc
aatgatattctgatgaagttggagaagaaggatttggtgtgggagaggtactatgatcta
tcctcacaggagctaggagagcttattcgtagtcctaagatgggcagaccgcttcacaag
ttcatccaccagttcccaaaagtgaatcttgcagcacatgttcagcctatcactcgaact
gttctgaaggtggagctaacaattacacctgattttcagtgggacgaaaaaattcataaa
tatgttgagccgttttggataattgtggaagacaatgatggtgagaagatcctttcatca
cgagatcacactataagcttcactgtgtcaatctttgaaccgttgccacctcagtatttt
atccgagtgatttcagacaagtggcttggctcgcagactgtgttgcctgtatctttcaga
catcttattcttccagagaagtacccaccaccaaccgagttacttgacttgcagcccctc
ccagtcacggcgttaaggaatccagattatgagagactctatcaggatttcaagcatttc
aatccggtgcagacgcaggtctttactgttttgtataacacgaacgacaatgtgttggtt
gctgctccaacgggtagtgggaagactatatgtgcagagtttgctatactgaaaaatcat
caagaaggatctgatgctacaatgcgtgttgtctatattgcaccgcttgaggctattgct
aaggagcagtttcgtatctgggagagaaagtttgggaagggtcttggtttacgggttgtt
gagctaaccggggagacaacgttggatcttaaactgcttgagaaaggtcagataatcata
agtactccagagaaatgggacgcgctttcccgcagatggaagcagagaaaatacattcaa
caggttagtcttttcattgtcgacgagctccatctaattggaggtcacggtggtacagtg
ttagaagtaatcgtctctagaatgagatatatttcaagtcagggagataataagatcagg
attgttgcgctttccacttcccttgcaaatgcgaaagatcttggtgagtggattggggcc
agttcccacggccttttcaactttcctcctggagtccgtcctgttccactggagatccac
attcaaggagtggatatatccagttttgaggccaggatgcaggcgatgaccaagccaacc
tacaccgccatagtccagcatgccaagaacaataagccggctatagtatttgtcccaacc
cgtaaacatgtccgcttgactgctgtggatctgatggcttactctcacatggacaactcg
cagagccctgatttcctgttagggaaattggaagagctggagccttttgttagccaaatc
cgcgaggaaacactgaaggagacactgcggcatggtgttgggtacttgcatgagggttta
tgcagtatggatcaggagatcgtgacccagctctttgaagctggacggattcaggcttgt
gtgatgagcagttcattgtgttggggcactccattaactgcgcatttggtggtcgtaatg
gggacgcagtattacgatggaagggaaaattcacattctgattatcccgtctctgatctg
cttcagatgatgggacgtgctagccgacctctacttgacaatgccgggaagtgtgtgata
ttctgtcatgcaccgcgtaaagagtattacaagaaatttttgtatgaagcgttccctgtg
gaaagtcatctccagcatttcttgcatgataatttcaacgcagaagtggttgctggggtt
atagagaacaagcaagatgctgtggattatcttacatggactttcatgtacaggaggctt
ccccagaaccctaactactacaatctccaaggagttagccacaggcatttgtctgatcac
ctatcagaactggtcgagaacaccttgtctgatcttgaagctagtaaatgcattgagata
gaggatgagatggacctttctcctctcaaccttggtatgattgcttcctattattacatc
agctacacaaccatcgagcgtttcagttctcttctgtcttctaaaaccaagatgaaggga
cttgttgagatcttaacatcagcttcggagtatgacacgatccctatacggcctggcgag
gaggacgcagttaggagactcatcaatcaccagaggttctcttttgagaacccaaaatgc
acagaccctcatgtgaaggcaaacgcgcttcttcaggcgcatttttcgaggcaaagcata
agcgggaacttggcaatggatcagcgtgaggtccttttatctgcaaccagacttcttcaa
gcgatcgtggatgtgatatcgagcaatgggtggctgaatcttgctctattagctatggaa
gtaagccagatggtgactcaaggcatgtgggagcgggactccatgcttctgcagctccct
cacttcacaaaggacttagccaaaagatgccaagagaatccggggaaaagcattgaaacc
gtgtttgatcttgtggagatggaggacgaagaacgccaagagcttctcaagatgaaagac
tcagagctactagacattgccagattctgtaaccgcttcccaaacatcgaccttacttac
gaggttgtgggcagtgaagaggtgaccccgggaaaagaggtgacattgcaagtgatgctc
gagagagacatggaggggaggacagaagtgggacccgtggatgcacccaggtatcccaag
accaaagaagaagggtggtggctcgttgtgggggacactgagaccaaccagttgctggca
atcaagcgtgtttcgttgcaacggaaattgaaggtgaagctggatttcgcagtaccgagt
gaaccaggagagaagtcttacacactatacttcatgtgcgactcttacttgggttgtgac
caggagtattctttctctgttgatgtcaaagaatccggcgctggagatcacatggaagag
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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