KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10006961mg
Entry
EUTSA_v10006961mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10006961mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10006961mg
Enzymes [BR:eus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     EUTSA_v10006961mg
Spliceosome [BR:eus03041]
 Complex C
  Other components
   Step II factors
    EUTSA_v10006961mg
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 ABC_tran cobW nSTAND3 SLFN-g3_helicase ATPase_2 Helicase_RecD AAA_30 AAA_16 AAA_29 NB-ARC AAA_23 DAP3 FtsK_SpoIIIE T2SSE nSTAND1 SRP54 PhoH AAA_33 AAA_18 Sigma54_activat
Other DBs
NCBI-GeneID: 18992280
NCBI-ProteinID: XP_006415720
UniProt: V4L2W0
Position
Unknown
AA seq 703 aa
MANLPILQFEEKIVETVEKNPVVVIIGETGSGKSTQLSQILHRRGYTKSGVIAVTQPRRV
AAVSVARRVAQELDVNLGEDVGYAIRFEDRTSSKTRIKYLTDGVLLRESLSNPMLDDYSV
IILDEAHERSLNTDILLGLMKRLVRIRSSNFKVLITSATLDGEKVSEFFSGCPVLNVPGK
LYPVEILYSKERPGSYIESSLKVAIDIHVREPEGDILIFMTGQDDIEKLVSKLEEKVRSL
AEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPFAVFRDDFLDATVPE
IQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYLIDAIDGNGAITSIG
RTMSELPLEPSLSRTLIEANENGCLSQALTVVAMLSAESNLLPVRSKPNEKKRKHDESNL
PDGSGFGDHIQLLQIFECWDRNNYDTEWCKQNGMQVRGMVFVKDVRRQLCQIMQKISKDR
LEVGARGRNSSSRDDYRKLRKALCVGNANQVAERMLRHNGYRTLSFKPQLMQVHPSSVLS
TDNEGMLPNYVVYHELISTTRPFMRNVCVIEMSWVAPIKRKIEKLNVRKLSGGPANSFKE
PEEKTELSKNNNNAETTPPAVSENVESRIEAARERFLARKGQK
NT seq 2112 nt   +upstreamnt  +downstreamnt
atggcgaatcttccgatccttcaattcgaagagaagatcgttgaaacagtggagaagaac
ccagtggtagttataatcggagaaaccggctctggaaagagtactcagctctctcagata
cttcatcgacgtggctacacaaagtccggcgtaatcgccgtcactcagccccgacgcgtc
gccgccgtttccgtcgccagacgcgtcgcgcaggagcttgatgtgaatctcggagaagat
gttggttatgcaatacgtttcgaggacagaacttcgagcaaaactcgcattaaatacctt
acagatggagttttacttcgtgagagtctgtctaatccaatgcttgatgattattctgta
atcatattggatgaagctcacgagagaagtttaaacacggatattctgttgggtctaatg
aaacgtttggttagaatccgttcgtctaacttcaaagttcttataacctctgcaacactt
gatggagagaaggtttctgaattcttttcgggctgccctgtgctgaatgtacctggaaaa
ttgtaccccgtggaaatattatacagcaaagagcgccctggcagttatattgagtcatct
ctgaaagtagcaattgatatacatgttcgtgagccagaaggtgatatcttaatcttcatg
actggacaggatgatatagaaaaattagtatcaaagctggaggaaaaagtacgaagctta
gcagaaggatcctgtatggatgctattatttatcctcttcacggatctctgccacctgaa
atgcaggttcgtgtatttagtccacctcctccaaactgccggaggtttattgttgctaca
aatatcgctgaaacttcccttactgtggacggggttgtgtatgtaattgattcagggtat
gtgaagcaaagacaatataacccttcgagtggaatgtattctcttgatgttattcaaatt
agcaaagtgcaagctaaccaacgagctggacgtgctggtagaactagacctgggaaatgt
tatcgattatatcccttcgcagtgttccgggatgacttccttgatgcaacagttcctgaa
atacaacgaacttctcttgctgggagtgttctttacttgaaatcgttggatcttcctgat
attgacattctgaagttcgattttcttgacgctccatcatctgagtcattagaagatgcg
ttgaagcaactgtatctcattgatgcaattgatgggaatggagctataacaagtattggg
cggacaatgtctgagcttccactagaaccatcattgtcaagaacattgatagaagcaaat
gaaaatggttgcttatctcaagctctaacagtagttgccatgttgtcagcagagagtaat
ctacttcctgttaggagcaaaccaaatgaaaagaagaggaagcatgatgaatctaatctc
cctgatggatccggatttggtgatcacattcaattgctacagatttttgaatgttgggac
cgtaataactatgatacggaatggtgcaaacaaaatggaatgcaggtgcgagggatggtg
tttgtcaaagatgttagaagacagttatgtcagattatgcaaaaaatatccaaagatcga
ttggaagttggggcacgtggaaggaatagttcaagccgagacgactacaggaagttgagg
aaagctctatgcgttggtaatgcaaaccaagttgctgagagaatgcttcgtcataatgga
taccggactcttagcttcaagccccagctaatgcaggtgcatccatcatctgtgttgagt
acagacaacgagggaatgttacctaattacgtagtgtaccatgagctgatttccaccaca
cggccgttcatgcgtaatgtttgtgtaatagaaatgtcatgggtggctcccatcaaaaga
aagatcgagaaactaaatgtcagaaaattgagcggtggaccggctaactctttcaaggaa
cctgaggagaagacggagctgtctaagaacaacaacaatgcagaaacaacgccacctgca
gtttctgagaatgttgagagtaggattgaagcggccagggaacggtttcttgctcgtaaa
ggacagaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (27)   
   Pfam (27)   
All databases (41)   

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