KEGG   Ficedula albicollis (collared flycatcher): 101809945
Entry
101809945         CDS       T02815                                 
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03013  Nucleocytoplasmic transport
fab03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101809945 (UPF1)
   03015 mRNA surveillance pathway
    101809945 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fab03019]
    101809945 (UPF1)
Enzymes [BR:fab01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     101809945 (UPF1)
    5.6.2.5  RNA 5'-3' helicase
     101809945 (UPF1)
Messenger RNA biogenesis [BR:fab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     101809945 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101809945 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 DEAD Helicase_RecD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 101809945
NCBI-ProteinID: XP_016159967
Position
28:complement(4322378..4356383)
AA seq 1064 aa
SWQHFPVEVFGVDFLAVHPNLQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYY
TKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDG
PLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQ
DRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLL
RYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKE
QKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGK
AGRGGRQKNRFGIPGSSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3195 nt   +upstreamnt  +downstreamnt
tcctggcagcactttcctgtggaggtttttggggttgattttttggctgtgcaccccaat
ttgcaggtgaatggtcctgatgggatcctgcagaatggagctgtggatgagaacgtggcc
aagaccagccagctcctggcagagctcaactttgaggaggatgaggaggacacttattac
accaaggacctgcctgtgcacgcctgcagttactgtgggatccatgaccctgcctgtgtg
gtttactgcaacaccagcaagaagtggttctgcaacgggcgtgggaacacctctggcagc
cacattgtgaatcacctggtgagagccaagtgcaaggaggtgaccctgcacaaggacggg
cccctgggtgagactgtcctggagtgctacaactgcggctgccgcaacgtcttcctgctg
ggcttcatccctgccaaggctgactccgtggtggtgctgctgtgcaggcagccatgtgcc
agccagagcagcttgaaggacatcaactgggacagttcccagtggcagcccctgatccag
gaccgctgcttcctctcgtggctggtgaagattccctcggagcaggagcagctccgcgcc
cgccagatcacagcccagcagatcaacaagctggaggagctctggaaggaaaatccatct
gcaaccctcgaggacttggaaaaacctggtgttgatgaggaaccccagcatgtcctgctt
agatatgaagatgcttatcaataccaaaatatctttggtcctctggtcaagcttgaggca
gattatgacaagaaactcaaagaatctcagacccaagataacatcacagtcaggtgggac
ctgggcttgaacaagaagagaattgcttatttcactttgccaaagactgattcagacatg
cgcctcatgcagggagatgagatctgcctgaggtacaagggagacctggcccctctctgg
aaaggaattgggcacgtgatcaaagttcctgacaattatggtgatgagatcgccatcgag
ctgaggagcagcgtgggagcccctgtggaggtcacccacaacttccaggtggattttgtg
tggaaatccacttcctttgacaggatgcagagtgctctgaaaacatttgcagtggatgag
acctcagtgtctgggtacatttaccacaaactgctggggcatgaggtggaagatgtcatc
atcaaatgccagctgccaaaacgtttcacagcccagggcctccctgacctcaaccactct
caggtttatgctgtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccct
ggcactgggaaaacagtgacatcagccaccatcgtgtatcacctggccaggcagggcaat
gggcctgtgctggtgtgtgcccccagcaacatcgccgtggaccagctgacagagaagatc
caccagaccggcctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcc
cccgtgtccttcctggccctgcacaaccagatcaggaacatggacagcatgccagagctt
cagaagctgcagcagctcaaggatgagactggagaactttcctctgctgatgagaagaga
taccgggcactgaagcgcacggcagagcgggagctgctcatgaacgcagatgtgatctgc
tgtacctgtgtgggtgctggggacccccgcctggccaagatgcagttccgctccatcctc
atcgacgagagcacgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggcc
aagcagctgatcctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaag
gcggccaaggcggggctgtcgcagtcgctgttcgagcgcctggtggtgctgggcatccgg
cccatccggctgcaggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaac
atcttctacgagggctcgctgcagaacggcgtcactgcagctgacagggtgaagaaaggc
tttgatttccagtggccccagcctgacaaacccatgttcttctacgtgacccagggccag
gaggagattgccagctcaggcacctcctacctcaacaggactgaagctgccaacgtggag
aagatcaccaccaagctgctgaaggccggggccaagcccgaccagatcggcatcatcacc
ccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggctccctgcac
accaagctctaccaggaggtggaaattgccagtgtggatgccttccagggcagggagaag
gatttcatcatcctgtcctgtgtgagggccaacgagcaccagggcatcggcttcctcaac
gaccccaggaggctgaacgtggccctgaccagagccaggtatggggtgatcattgtgggg
aaccccaaagccctgtccaagcagcccctctggaatcacctcctgaattactacaaggag
cagaaggtgctggtggaggggcccctgaataacctgagggagagcctgatgcagttcagc
aaaccccgcaagctggtgaacaccatcaaccctggagccaggttcatgaccacggccatg
tacgacgcgcgcgaggccatcatccccggctccgtctacgaccgcagcagccaaggccgc
ccatccaacatgtacttccagacccacgaccagatcgggatgatcagcgccggccccagc
cacgtcaccgccatgaacatccccatccccttcaacctggtcatgccccccatgcccccc
ccgggctacttcggccaggccaacggccctgctgcaggccgtggggctcccaaaggcaaa
gccgggcgcggcgggcggcagaaaaaccgatttgggattcctggcagcagccagtccaac
ctgcccaacagccaggccagccaggatgtggtgtcccagcccttctcccagggccccctg
acccagggctacatctccatgagccagccctcccagatgagccagcctgggctctcccag
ccagaattatcccaggacagttaccttggtgatgagtttaaatcccagattgacgtggcg
ctgtcacaggactcaacttaccagggggaacgagcttatcaacatggtggagtgacgggg
ctgtcacagtattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (52)   

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