KEGG   Flavobacteriaceae bacterium 3519-10: FIC_00679
Entry
FIC_00679         CDS       T00953                                 
Name
(GenBank) possible ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
fba  Flavobacteriaceae bacterium 3519-10
Pathway
fba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FIC_00679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fba03019]
    FIC_00679
Enzymes [BR:fba01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FIC_00679
Messenger RNA biogenesis [BR:fba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FIC_00679
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 CMS1
Other DBs
NCBI-ProteinID: ACU07134
UniProt: C6X3Z6
Position
708155..709297
AA seq 380 aa
MSFESLGLSHNIIKSVRKLGFLKPFPVQEQTIPVILSGKDLMGVAQTGSGKTACFVMPIL
DKLQNEDIKKDRNIQVLVLAPTRELVIQIDEVFRVFTENLKREIRTMAVYGGVSINPQMK
GMLGVEVLVATPGRLLDLIDHKALSISQITHLVIDEADKMFQLGFEEEMNTLFAMMPPKK
QTVLFSATLNDKVEEIKQRLTIEPVLVEIKQEEVDIDQITQIAYHVTNESKGPFLRYLIK
EQDIKQALVFASSTRSADHLAEKLNKNKIPATAIHGQKSQGSRSGNLQGFKEGETQILVA
TDLIGRGIHIDALEVVINYELPRSPLDYIHRIGRTGRANGHGTAITLLTDDELQHFRVIQ
KKMGKRVELIRTGDINLHGY
NT seq 1143 nt   +upstreamnt  +downstreamnt
atgtctttcgaatcccttggcctgtcgcataacattataaaatcagttagaaaattaggt
ttcctcaagccatttccggttcaggaacaaaccatccccgtgattttatccggtaaggat
ctgatgggtgttgcacagacaggttcgggaaagacagcgtgttttgtaatgccgattctg
gataaacttcagaatgaagacatcaaaaaagaccgtaatatccaggttttagtgttggct
ccaactcgtgagctggtgattcagatcgatgaggttttccgtgtttttaccgaaaattta
aaaagagaaatccgcaccatggccgtctacggtggggtttcaatcaatcctcaaatgaaa
ggaatgctcggcgtggaagtgttggtcgcgactccgggccggcttctggatttaattgat
cataaagccttaagtatttcccagatcactcatttagtgatcgatgaagccgataaaatg
ttccagctgggttttgaggaggaaatgaatacgctttttgcgatgatgcctccgaaaaag
caaaccgtattattctccgctacgctgaatgacaaagttgaagagattaaacaaaggctc
acgatcgaacctgttctcgtagaaatcaagcaggaagaagttgatatcgatcagatcacc
cagatcgcttatcatgtaaccaatgaaagcaaaggcccttttctgcgttatctgatcaag
gaacaggatatcaaacaggcacttgtatttgcatcatcaacaagatcagcagatcatctc
gccgaaaaactcaataaaaacaaaattcctgcgaccgcaattcacggtcaaaaatcgcag
ggttcgagatcgggaaatctacagggttttaaagagggcgaaacgcagattctggtcgcg
acagatcttattggccgcggaatccacattgatgcgcttgaggtagtgataaattatgaa
ctgccgcgctcgccgctggattatattcacagaatcggacgaaccggccgcgcaaacggg
cacggaactgcaataacacttctaaccgatgatgaactgcagcatttccgcgtaatccag
aaaaaaatgggaaaacgcgtcgagctgatccgcaccggcgatataaaccttcacggttac
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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