KEGG   Fragilariopsis cylindrus: FRACYDRAFT_162439
Entry
FRACYDRAFT_162439 CDS       T04784                                 
Name
(GenBank) PRP38-domain-containing protein
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FRACYDRAFT_162439
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_162439
Spliceosome [BR:fcy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    FRACYDRAFT_162439
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    FRACYDRAFT_162439
SSDB
Motif
Pfam: PRP38
Other DBs
NCBI-ProteinID: OEU22210
JGI: 162439
UniProt: A0A1E7FVM7
Position
Unknown
AA seq 173 aa
MANVTDPVIRSLQGSDPQNLMEYITRQKIYDSRFWKEECFGLTATDVIERAAKSLSCVGG
TFGGVGRPTKFLSLTLKLLQLQPSIDIVQAFIEQNDFKYLKALGCFYLRLTGRPQEIYEM
LEPFYADYSKLKYRDVNEWKLIHMDEFIDELLTKQFCCGIAMPRLPARVTLQD
NT seq 519 nt   +upstreamnt  +downstreamnt
atggcgaacgttacagatcctgttattcgttctttgcagggttctgacccacagaacctc
atggaatacattactcgacagaaaatttacgatagtcgtttttggaaagaagaatgtttt
ggattgactgcaacagacgtaatagagagagcagcgaaatctctatcgtgtgtcggtgga
acatttggaggggtaggaagaccgacgaaatttctatctctgacgctcaaacttttacag
cttcaaccgagtattgatatcgttcaagcctttatagaacagaacgattttaaatatctc
aaagcacttgggtgcttttatctgagattgacaggacggccgcaagaaatatacgaaatg
ttagaaccattttatgcagattattcaaaacttaaatatcgtgacgttaacgaatggaaa
ttgatacatatggatgagttcatcgatgaactattgacgaaacaattttgttgcggaatt
gctatgccaagattacctgcacgagtaacactgcaggat

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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