KEGG   Fervidicoccus fontis: FFONT_0602
Entry
FFONT_0602        CDS       T01936                                 
Name
(GenBank) RNA Polymerase
  KO
K13798  DNA-directed RNA polymerase subunit B [EC:2.7.7.6]
Organism
ffo  Fervidicoccus fontis
Pathway
ffo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ffo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FFONT_0602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ffo03021]
    FFONT_0602
Enzymes [BR:ffo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FFONT_0602
Transcription machinery [BR:ffo03021]
 Prokaryotic type
  Archaeal type
   RNA polymerase
    Core subunits
     FFONT_0602
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_45 PFU
Other DBs
NCBI-ProteinID: AFH42592
UniProt: I0A0T5
Position
complement(563354..566779)
AA seq 1141 aa
MSNNIQEEGARESKKKEDLSYLDGEARWLLAKKFIEEQGLSRQHLDSYNRFVETMLQEII
DEQEIIETAFPEVKFKLGKIEVLKPVSREADGSEVEITPFEARVRNITYASPMYLEITLV
ENGVESIKDKVYIGDLPIMIKSKLDPLSKMSPEELIKINEDPDDPGGYFIINGTEKVIIA
QEDMVTNRVLVDEGKAGSNVLYTAKAISSTGSYRISVMMELHKDGTITISFGGVPGKLPF
AILMRALGFEKDQDIVYAVSLNPEVQSLLLPSLEASRSIATVDDALDYIGTRVAIGQVRE
NRIERAKQVIDKYFFPHLGSSPKDRRKKGFFLAQMANMILELSLGWREPDDRDHYANKRL
KLAGDLLATLFRASFKNFVKDFNYQAEKVLTRSKRFKISSIVRSDVMTERIRHALATGTW
VGGKTGVSQLLDRTNWMSMLSHLRRVVSPLSRSQPLFKARDLHGTQWGRMCPFETPEGPN
CGLVKNLSLLTYITVGISEKKVENQLYKLGVIPVEEALKDAVENNNTQYLEMTRVYLNGR
HIGYYPDGEKLASTIREMRRKGDLHHEINVVYYERPQIKELYVNTDAGRIRRPLIIVRNG
KPAVTKRDIEALRKGEKTFSDLVKEGKIEYLDAEEEENAYIALDPSDLLGPNGKEYTHLE
LWTAGIFGVAASTIPYIEHNQSPRNTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKP
LVQTKPLEVIRYNEKPAGQNAVVAIMSYTGYNIEDALIFNKSSVERGFMRSTFFRLYSTE
EKKYPGGQEDKIEVPEAGVKIYRGFEVYKKLDPDGIISPETEVADGEALIGKTSPPRFLE
EFKEYGFGASVRKDTSVTIRYGEKGVVDSVFISETQEGDKLVKVRVRDYRIPEIGDKFAS
RHGQKGVIGMLIPQYDMPYTEEGIVPDIIINPHAFPSRMTLGQLLEMLAGKTAALLGKTV
DATPFSKEPVEEIRMKLMKKGYSPDGREVMYDGRTGEIIGVPIMIGIVYYQRLHHMVADK
FHARSRGPVQLLTRQPTEGRAREGGLRFGEMERDVLVGHGASMLLRERLLESSDKTVIYV
CAKCGHIGWFDRNKNAYVCPIHGDKGEIYPVEVAYGFKLLIQELMSMGIMPRLKLGDIVG
D
NT seq 3426 nt   +upstreamnt  +downstreamnt
atgtccaataatatccaagaagagggagcgcgtgaatccaagaaaaaagaagaccttagc
tacttagatggagaagcgaggtggcttttagctaaaaagtttattgaagagcaggggctt
tctagacagcatctcgattcttataacagatttgttgagactatgctgcaggaaattata
gatgaacaggagattatagaaacagctttccctgaagtgaagtttaagcttggtaagatt
gaagttttaaagccagtttctagagaggctgacggatctgaagtagagataactccgttt
gaggcgagggtaaggaacattacttatgcgtccccaatgtaccttgaaataacgctggtt
gaaaatggagttgagagcataaaggataaggtatacatcggagatcttccaataatgatt
aaaagcaagctcgatcctctgagcaagatgagccctgaggagcttataaagataaacgaa
gatcccgatgatccgggaggatactttataataaatggaactgaaaaagtcataatagct
caggaagatatggtaacaaacagagtattggtcgatgagggaaaggcggggagcaatgtt
ctctatacggctaaggcaatatctagcaccggatcttataggatttcagttatgatggag
ctccataaggatgggactatcacgatctcatttggaggagttcctggaaagcttcccttt
gccatactcatgagggccctcggatttgagaaggatcaggatattgtttatgcggtaagc
ttaaacccggaggttcagagcctccttctcccaagccttgaagcctccagatctatagcg
actgtcgatgacgctttagattatataggaactagagttgcaataggtcaggtcagggag
aacagaatagaaagggcaaagcaggttatcgacaagtacttcttccctcatttgggttct
tcccctaaggacagaaggaagaagggcttcttcttagcacaaatggccaacatgattctt
gagctctctttaggctggagggagcctgatgacagggaccattacgcgaacaaaaggctg
aagcttgcaggcgacctgcttgcaaccctcttcagggcgtccttcaagaactttgtaaag
gactttaactaccaagctgagaaggtcctaaccaggagcaagaggttcaaaatatcgtca
atagtaagatcagatgttatgaccgagaggataaggcatgccttggcaacgggcacatgg
gtcggaggaaagacgggcgtatcccagcttttagataggacgaactggatgagcatgctc
agtcatttgagaagggttgtatcgccgctgagcaggagccagcccctgtttaaggctaga
gacctccacggcactcaatgggggaggatgtgtccattcgagactcccgagggtccaaat
tgcggtctggtgaagaacctctcccttctcacatacataactgttggaatcagcgagaag
aaggttgaaaaccagctttacaagctcggagtcataccagttgaagaagcccttaaagac
gctgtggagaacaacaacacccagtacctagaaatgactagggtttacttaaacggaagg
cacataggatattacccggatggtgaaaagctcgcttccacaataagggagatgaggagg
aagggagatcttcatcacgagatcaatgtcgtttattacgagagacctcaaataaaagaa
ctctacgtcaatacagatgctgggaggataaggaggcctttaatcatagtgagaaacgga
aagcctgcagtaactaaaagagacattgaagctttaaggaaaggggaaaagacgttttca
gatcttgtaaaggaagggaaaatagagtacctcgatgctgaggaagaggaaaacgcgtat
atagctctagatccttcagatctgctaggaccgaatggaaaggaatatactcatcttgag
ctctggactgctggaatatttggagtcgcggcttcaactattccatacattgagcataac
cagtccccgagaaacacctaccagtctgcaatggttaagcaggccttaggtctatatgca
gctaacttcaacgttagaaccgattcaagggggcatatactccaccaccctgaaaagcct
ctagttcagacaaagccgctggaagtaataaggtataatgaaaagcctgcaggacagaac
gctgttgtagccatcatgtcctatactgggtacaacatcgaagatgcactgatcttcaat
aagtcaagcgttgaaagggggttcatgagatcgacgttcttcaggctctactcaactgag
gagaagaagtatcctggaggtcaggaggacaaaattgaagtccccgaggcaggcgtgaag
atatacaggggttttgaggtatacaaaaagctcgacccggatggcataatctctccagaa
actgaggtcgcggatggagaggcgctcatcggcaaaacgagcccaccgagattccttgag
gaattcaaagaatacggcttcggagcttcagtaaggaaggacactagcgtaactataagg
tacggagagaagggagttgtagacagcgttttcatatcagaaacacaggaaggcgacaag
cttgttaaggtaagggtcagggactacaggatacctgagataggggataagtttgcctcg
aggcatggacagaagggagtaataggaatgcttatacctcaatatgacatgccatatacg
gaagaagggatcgttccagacataataataaatccgcatgcttttccatcaagaatgacg
ctcggtcagcttctggaaatgctcgcaggaaagacagcagctcttctaggaaaaacagta
gatgcaactccgttctcaaaggagcccgttgaggaaataagaatgaagctgatgaagaaa
ggatattcgccagatggaagggaggtaatgtatgacgggaggacaggagagataatagga
gttcccataatgataggtatagtttattatcagaggctccaccacatggttgctgataag
ttccacgccagatcaagaggtcctgtgcagctcttgacgagacagccaaccgagggaagg
gcaagggaaggagggctcaggttcggagagatggaaagagacgtgcttgtagggcatgga
gcttctatgctcctcagagagaggcttttagaaagtagcgacaagacggtcatttatgtt
tgcgcgaagtgcgggcacatagggtggttcgatagaaacaaaaatgcatatgtctgtcca
atacacggagataagggagagatatatcctgtagaggtggcatacggatttaagctcctt
attcaggagcttatgagcatgggaatcatgcccagattaaagcttggagatatagtgggt
gattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

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