KEGG   Flavobacterium gilvum: EM308_11535
Entry
EM308_11535       CDS       T04609                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
fgl  Flavobacterium gilvum
Pathway
fgl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fgl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EM308_11535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fgl03019]
    EM308_11535
   03400 DNA repair and recombination proteins [BR:fgl03400]
    EM308_11535
Enzymes [BR:fgl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     EM308_11535
Messenger RNA biogenesis [BR:fgl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     EM308_11535
DNA repair and recombination proteins [BR:fgl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      EM308_11535
SSDB
Motif
Pfam: DEAD Helicase_C HTH_40 RQC HRDC RecQ_Zn_bind ResIII Peripla_BP_4 Helicase_Sgs1 IF2_N zf-CXXC
Other DBs
NCBI-ProteinID: AOW10085
UniProt: A0A085EIQ0
Position
complement(2765003..2767114)
AA seq 703 aa
MTSETLHAKLKENFGFEKFRPNQENVINSILCGKDTLAIMPTGGGKSICFQLPALLFPGI
TIVISPLIALMKDQVDSLKTNGIAACYINSSQTSDEQQLLIENLINQKLKLVYLAPESLQ
FLENVINQITVSLIAIDEAHCISAWGHDFRPAYTNLGYLKNRYPSTPILALTATADKATR
TDICEQLQLKDPNIFVSSFDRKNLSLEVRPALDRVKQIIDFIENKPNEAGIVYCLSRKTT
EELSEKLQKKGINAKAYHAGLDNKIRSKTQDGFINDDFQVVCATIAFGMGIDKSNVRWVI
HYNLPKNIEGYYQEIGRAGRDGLPSETVLFESYGDMIQLQNFASQGLNSEVQLAKLERMK
QYADALSCRRKILLSYFGELVSDNCGNCDICKNPPAFFDGTIIAQKGLSAISRLKETETL
PVIIDFLRGSKNASIYDKAYQNLKTYGVGVDISWYDWNQYLIQLINLGYCEIAFHQQNKI
KLTPFAKKVLFDGEKVKLTSIQKINNQPIESKTTKTKSSTNSLFEFLRKLRAEIAKEEEV
PAYVIFNDATLKQFEIHRPMSDNEFLAIDGVGKAKLEKYGDVFIKAIIEFQKIKKIRAKK
ENTTYKETLELFKLGMSVEEIATKRKLGIPTIISHLAKLYGDGHPINLRNFINEEEISKI
AEAKIKLKSPNALKPYFDFFEEQISYDKIRVGLTILEKENQIS
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgacatcagaaactttacacgccaaactaaaagaaaattttgggtttgaaaaatttaga
cccaatcaggaaaatgttatcaattccattttatgtggaaaagatacgctggcaattatg
cctaccggaggcggaaaatcgatatgttttcaacttcctgccttactctttccgggaatc
acgatcgttatttcgccattaatcgccttgatgaaagatcaggttgacagtttgaaaacc
aatggaatagccgcttgttacatcaacagcagtcaaacttcagatgaacaacaacttctc
atcgaaaatttaatcaaccaaaaactcaaactggtttatcttgctccagaaagtttacaa
tttttagaaaatgtcattaatcagataactgtgagcttgattgctattgacgaggcacac
tgtatttcggcttggggtcacgacttccgaccggcatataccaatttgggatacctgaaa
aaccgctacccttctactcctatcctcgcattgactgcgactgccgacaaagcgacacgt
actgatatctgtgaacaactacaactaaaagatccaaatatttttgtatcgtcatttgac
agaaaaaatttgagtttggaagtcagacctgctttggatcgtgtcaaacaaattatagat
tttatagaaaacaaaccaaatgaagcgggtattgtttattgtttaagcagaaagacaacc
gaagaactctcagaaaaattacaaaaaaagggaattaatgccaaagcatatcatgcggga
ttagataataaaattcgttccaaaactcaggatggttttatcaatgatgattttcaagtg
gtttgtgccacaattgctttcggaatgggaatcgacaaatccaatgttcgttgggttatt
cattacaatttaccaaaaaacattgaaggttattatcaagagattggcagagcaggtcgt
gatggattaccatctgagacagttttgtttgaaagttatggtgatatgatacagttacaa
aattttgcttcgcaaggtttgaactccgaagtacaactagcaaagttggaaagaatgaaa
caatatgctgatgcgttgagttgtcgtagaaaaattttactttcctactttggcgaactg
gtttccgataattgcggaaactgtgatatttgcaaaaatccgccagcattttttgacgga
accattattgcccaaaaaggactttctgcgataagccgtctaaaagaaacagagacatta
ccagtaataattgattttttgagaggttctaaaaatgcttctatttacgacaaagcttat
caaaatttaaaaacttacggagttggtgtggatatttcatggtacgattggaatcaatat
cttatccaactaataaacttaggatattgcgaaattgctttccatcagcagaataaaata
aagttaaccccttttgctaaaaaagtactatttgatggcgaaaaagttaagctaactagc
attcaaaaaattaataatcaaccaattgaatccaaaactactaaaactaaatcatctaca
aactccctttttgaatttctacgaaaattacgagcagaaattgcaaaagaagaagaagtt
cctgcttatgtaatttttaatgacgcaacattaaaacagtttgaaattcacagaccaatg
agtgataacgaatttctagcaatagatggagttggaaaagctaaattggaaaaatatggc
gatgtttttataaaagctattattgaatttcaaaaaattaaaaaaataagggcaaaaaaa
gaaaatactacttataaagaaactctggaattatttaaacttggaatgtccgttgaagaa
attgctaccaaaagaaaattgggtattcctacaataatttcacatttagctaaattatac
ggtgatggtcatcctataaatttgagaaattttataaatgaagaagaaatatcaaaaatt
gcagaagcaaaaattaaactaaaatctccaaatgctttaaaaccgtattttgattttttt
gaagaacaaatttcatatgacaaaatcagagtcggtttaaccatcctcgaaaaagaaaat
caaatatcttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (22)   

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