KEGG   Candidatus Filomicrobium marinum Y: BN1229_v1_3248
Entry
BN1229_v1_3248    CDS       T03857                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
fiy  Candidatus Filomicrobium marinum Y
Pathway
fiy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fiy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BN1229_v1_3248 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fiy03400]
    BN1229_v1_3248 (mfd)
Enzymes [BR:fiy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BN1229_v1_3248 (mfd)
DNA repair and recombination proteins [BR:fiy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BN1229_v1_3248 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H SecA_DEAD RecG_dom3_C
Other DBs
NCBI-ProteinID: CPR21815
UniProt: A0A0D6JJI8
Position
1:complement(3175225..3178719)
AA seq 1164 aa
MSGATPKNHDLLLTGVPEGLDALVLAKLAQEAQGAEGHAGILIHVARDDRRVDQLEGALR
FFAPQIRTISFPAWDTVPYDRVGPNSDIVARRIAALAKLTIGRRKAPTLVLTTVNAILQR
VPPVAFVRSSLKQMAAGQRIDMGRLITRLQLAGFTRTGTVMEPGEYAVRGGILDLFPPGR
TNPVRLDFFGDTLESIKSFDAETQRTLKPLQKIVLMPISELALGDAATSRFRSRYVELFG
GGTGSDPLYEAVSAGSRYPGQEHWLPLFHEQLDTLADYAPDSAISFDHRADEAVRQRFEQ
IAEHYEARTQALEVEAFGAPPYKPVPPDLMFLDGKAWGELMGQRQVYRLNPFETGEGADV
RSWNGRPGRTFAAERLAGDVNVFDAVVSHISALKREHRRVMIAAWTPGARERLAGLLNDH
GLKETRNVESFDAALELPADVTPMAVLGLEQGFVTPELAVIGEQDILGDRLVRPRRKARR
AVDVLTEATSLSVGDLVVHADHGIGRFAGLTTISALGAMHDCLELIYAGGDKLFVPVENL
ELLTRYGAEDGSAQLDRLGGVAWQSRKARLKKRLQEIAGELIKIAALRQLREAPALAPPA
GAFEEFVSRFPYEETEDQAASIDAVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVTAM
SGLQVAVVVPTTLLARQHFKTFSDRFKGLPLNVAQASRLVGAKELAEVKEGLSNGQIDIV
VGTHALLSKSIKFARLGLLVIDEEQHFGVAHKERLKQLREDVHVLTLSATPIPRTLQLAL
TGVRELSLITTPPVDRLAVRTYISPFDPVIVRDALRRERYRGGQAFYVVPRLSDLPDVRE
FLTEAVPELRVATAHGQMTPTELEDVMTAFYEGRYDILLSTPIVESGLDVPNANTLIVHR
ADMFGLAQLYQLRGRVGRSKARAYAYITTPPGKALTEGAEKRLKVLNSLDSLGAGFSLAS
HDLDIRGAGNLLGEEQSGHIREVGFELYQSMLEEAVAAMKGGEGGELKDQWSPEISLGTS
ILIPESYVTDLQLRLGLYRRLASLETRADIDNFAAELVDRFGPAPEEVTHLLDVMEIKGL
CRQASVSRVDAGPKGAVLSFHQNSFPNPEGLVELMQRSRGLIKLLPDHKLVFKAEWDLPE
QRLKGVRGLVKQLAEIAERERKVA
NT seq 3495 nt   +upstreamnt  +downstreamnt
atgagcggcgctacccctaaaaaccacgatctgctgctgacaggtgtcccggaggggctg
gatgcacttgtgctggccaagctcgctcaggaagcgcaaggcgctgaggggcatgcgggt
attctgatccacgtcgcgcgcgacgatcgccgggtcgaccagctcgagggtgcgctgcgc
ttcttcgcgccgcaaattcgcacgatctcttttccagcgtgggatacggtcccctatgac
cgggttgggcctaattccgatatcgtggcgcgtcgcatcgcggcactggccaagctgacg
atcgggcgtcggaaagcgcctaccctggtgctaaccaccgtcaacgcgatcctgcaacgg
gtgcctccggtcgccttcgtccgcagctccttaaagcagatggcagctgggcagcggatc
gatatggggcgattgatcacgcgattacagctcgcgggatttacgcgcactgggacggtg
atggagccgggcgaatatgcggttcggggtggcattctcgacctttttccgccgggcaga
accaatccggttcggctcgatttctttggcgatacgctggagagcataaaatccttcgac
gcggaaacgcagcgcacactcaagcctttgcagaagattgtgctcatgccgatttccgaa
ctggcgctgggggatgcagcgaccagccgttttcgtagtcgttacgtcgaactgttcggc
ggagggacaggcagcgatccgctctacgaggccgtgagtgcgggcagccgctatccgggg
caggagcactggcttccgctctttcatgagcaactcgatacactggcggactacgcgccg
gattctgccatttcattcgaccaccgcgccgatgaggctgtgcggcagcgtttcgagcag
attgcggaacattacgaagcgcgcacgcaggcgcttgaggtggaagccttcggcgcgcct
ccatacaagcctgtgccgccagacctcatgttccttgatgggaaagcgtggggtgaactt
atggggcagcgccaagtctatcgtttgaacccgtttgagacgggcgaaggcgcggacgta
cgctcatggaatggccgcccgggacgaacgttcgcggccgagcgcctagcaggagacgtc
aatgttttcgacgctgtcgtcagtcatatctcggcgctaaagcgtgaacatcggcgcgtg
atgattgcggcgtggacgcccggtgctcgggagcggcttgccggattgctcaacgatcac
ggtctaaaggagacccgcaacgttgagagttttgatgcggctctggagcttccggcggac
gtcacgcccatggctgtgctcggtttggagcagggttttgtcactcccgaactcgcggtt
atcggtgagcaggacattcttggcgacaggctggtgcgaccgcggcggaaagcccgtcgc
gctgtggacgttcttacggaagcgacgagcctttccgttggcgatctcgttgtgcatgcc
gatcatggtattggccgctttgcagggcttacgacgatttccgcactcggcgcgatgcac
gattgccttgagctgatctatgcgggtggcgacaaactgttcgtgccggttgagaacctc
gaactgttgacgcgctatggtgcggaggacggttcggctcagcttgacaggttgggtggt
gtcgcatggcaatcgcggaaggctcggctcaagaagcgcctccaggaaattgctggcgaa
ctcatcaaaatcgcagcgctacggcaattgcgcgaggcgccggcgttggcccctccggct
ggggcctttgaagagtttgtctcgcgttttccgtatgaggaaaccgaggatcaggccgcc
agtatcgatgcggtgatcgaggatcttggggcgggccgtccaatggatcgccttgtttgt
ggcgacgttggatttggcaagacggaagtcgcgttgcgtgcagcctttgtgactgcgatg
agcggccttcaggtcgcagttgtcgtcccaacgacgcttcttgcccgtcagcacttcaag
acatttagcgaccggttcaaaggattgccgctcaatgtggcgcaggcttcccggcttgtg
ggtgctaaagagctggctgaagtgaaggaggggttgtcaaacgggcaaatcgatatcgtt
gtgggaacccacgcgctcctcagcaagtcgatcaagtttgcccggctcgggctgctggtg
atcgacgaggaacaacacttcggtgtcgcgcacaaggaacgcctcaagcagctacgtgaa
gatgttcatgttctcacgctatcggcgacgcctattccgcggacacttcagcttgcgttg
acgggtgtacgcgagctgtctttgattacgacaccgccggtcgatcgtttggctgtgcgc
acgtatatctcgccgttcgatcccgtcattgtgcgcgatgcacttcgccgcgaacggtat
cgtggcggtcaggcattttatgtcgtcccgcgattgagcgaccttcctgatgtcagagaa
tttttgacagaagcggtgcccgaacttcgcgtggcgacggcacacgggcagatgacgcca
actgagttggaagacgtcatgactgcgttctacgaggggcgttacgacattctcttgtcg
acgccaatcgtcgagtccggtctcgatgtgcccaatgccaacacgctgatcgtccatcgt
gccgatatgtttggcttggcgcagctttatcagctgcgcgggcgcgtgggccgctcgaag
gcgcgtgcgtatgcctacattacgacgccaccgggcaaagctctgacggaaggcgccgag
aagcggctcaaggtcttaaattcattggactcattaggggcaggtttttcgttagcgtcg
cacgatctggatattcgtggtgcgggtaacctgcttggcgaagagcaatccgggcacatc
cgcgaagttggcttcgagctttatcagtcgatgctggaagaagccgtggctgcaatgaag
ggcggcgaaggcggtgagttgaaggatcagtggagtccggaaatttcgcttggtacgtcg
atcctcatccccgagagttacgtcacagatctacagctgaggctgggactttatcgcagg
ttggccagccttgagacacgtgcggatatcgacaattttgcagcggaattggtcgatcgc
tttggtcccgcgccggaagaggttacccatcttctggatgtcatggagatcaaaggtttg
tgccgtcaagcttccgttagccgggttgatgctggtcccaagggcgcggtgttgtcgttc
catcagaacagcttccccaatccggaaggcttggtcgaactgatgcagcgatcccgcggg
cttatcaaattgttgcccgatcataagctggtgttcaaagcggaatgggatctacccgaa
cagcgcctgaagggtgttcgggggctggtaaagcagttggcggaaattgcggaacgcgag
cgtaaggtcgcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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