KEGG   Flavisolibacter tropicus: SY85_09220
Entry
SY85_09220        CDS       T04392                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fla  Flavisolibacter tropicus
Pathway
fla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SY85_09220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fla03400]
    SY85_09220
Enzymes [BR:fla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SY85_09220
DNA repair and recombination proteins [BR:fla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SY85_09220
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase DUF5655
Other DBs
NCBI-ProteinID: ANE50657
UniProt: A0A172TV90
Position
complement(2224090..2226813)
AA seq 907 aa
MGLSLYNKKRNFSQTPEPSGKTKTSKSTLRFVIQKHDASSLHYDFRLEMDGVLKSWAIPK
GPSLNPADKRLAMMVEDHPYDYRNFEGVIPEGNYGAGTVIVWDEGYYTPVAGEQLSRKEQ
EQILLKELEMGSLKFILYGKKLNGVYTLRRMRKGEEKAWLLIKSKDEYATDDDVTAQEAS
VKSGKTLADIAAKKGVKLNHPKEQNATQQKGAKKAITAVKTAAGAKKISLTKRAGVLSPL
LKSYKDLIQAQPMPANIKPAFATLVDEPFSDPQWLYEIKWDGYRALAYLNNTKVKLISRN
NKPFTDKYAPVTAALKELGINAVFDGEIVAIDKNGLANFQLLQNWQNAPVQLQFYVFDIL
WLNGYDLTRLPLIERKKILCELIPPKDLILRYSDHVIGNGSAFYKAALKQGLEGIMAKRA
DSIYEAGKRTADWLKIKVNKRQEVVIAGFTVPRKTRKFFGALLLGVYEDDEFVYVGHTGS
GFNTKSLKEIYDRLQPLVTNKSPFKKVPKTNMPATWVKPQLVCEIKFTEWTKEHIARHPI
FMGLRTDKKAKDVRVEKEEKRSTIVKKAAGKKETKTPVKRTTKKKSSLSKNSKKISGLQL
QLENGANQTVTINKIDLSLTNLDKIYWPNEGFQKIDSINHYLRMAPYILPFLLDRPHSLN
RHPNGIGAPNFFQKDMKGKQPQWLETYTDYSESTKTNVEYLVCTNEASLIYMANLGCIEM
NPWHSRVNSWQYPDWCLIDLDPEGVSFNTVIEVAQVIKKILDASGAKGYCKTSGATGMHI
YIPLGAKYDFDQSKQLAELICKLVQQEMPNSTSMERSPAKRKEKVYLDFLQNKETQTAAA
PYSIRPRQGASVSTPLHWDEVKKGLAPTDYTIKNIYERVKAEGDLFKPVLGRGINLEKVI
QQLITIL
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgggcctttctttatacaataaaaagcgcaatttttcacagacgccagagccttctgga
aagacaaaaacttcaaagtctacgttacgctttgtgatacaaaagcacgacgcttctagc
ctgcattacgatttccgcttagagatggatggggtgctaaaaagctgggctattcccaaa
ggaccttcattgaaccctgctgataaacggttagcaatgatggtagaagatcatccatat
gactatagaaatttcgaaggcgtaatccctgaaggaaattatggtgctggtactgtaatc
gtgtgggatgagggatattatacaccagtggccggcgagcagctaagtaggaaagagcag
gagcaaattctgttgaaggagctagagatgggtagcctgaaattcattctttatggaaag
aaattgaacggtgtgtacacgttgagaaggatgagaaaaggagaggagaaggcttggtta
ttaataaagagtaaagacgaatatgctactgatgatgatgttacagcgcaagaggcttcg
gtgaagtcaggaaaaacattggccgatatagcagcgaaaaaaggcgtaaaactgaatcac
cccaaagaacaaaatgccactcaacagaagggggcaaagaaagctattactgcggtgaag
acagctgccggtgcaaagaagataagcctaacgaagagagctggggtactatctccacta
ttaaaatcgtataaagatctcattcaggcacaaccaatgcctgctaatataaaacctgca
tttgctactttggtggatgaaccttttagtgatccccaatggctatatgaaatcaaatgg
gacggttatagagctttagcgtatttgaataatactaaagtgaagttaatctcaagaaat
aataagccttttaccgataagtatgcgccggtaacagcggcattgaaagaattagggata
aacgctgtgtttgatggagagatcgtggctattgataaaaatggattagcaaactttcag
cttttacaaaactggcaaaatgcgccggtgcaattgcagttttatgtattcgatattctc
tggctcaatggatatgatcttacgcggctgcctttaatagaacgtaaaaagatcttgtgc
gagttaatacctccaaaagatttgattttgcgctatagcgatcatgtaattgggaatgga
agtgctttttataaagcggctttgaaacaaggattagaagggataatggctaagcgcgcc
gatagtatttatgaagcaggaaaacgtacagctgattggttgaagattaaagtgaataaa
agacaagaggtcgtaattgcaggatttacagtgccacgcaaaacccgtaagttctttgga
gccttactgcttggtgtatacgaagatgatgaattcgtgtatgtaggccatacaggcagc
ggttttaataccaaaagcctgaaagagatctatgaccgcttacagcccttggtaacgaat
aaaagcccatttaaaaaagtgcctaagactaatatgcctgccacttgggtaaaaccgcaa
ttggtttgtgagatcaagtttactgagtggaccaaagaacatattgcccggcatcccatt
tttatgggactgcgtacagataagaaggctaaagatgtccgtgtagaaaaagaagaaaag
cgaagcactatagtaaaaaaagcggctggaaaaaaggaaaccaagacacctgttaaaagg
acgactaaaaagaagtcttctttatctaaaaattctaagaaaatatctggcttgcaatta
cagcttgagaatggcgctaaccaaacagtaacaataaataaaatagacttatcattaacc
aatttagataagatctattggccaaatgaaggttttcaaaagatcgactcaattaatcat
tacctgcgaatggcgccatatatcttgccttttttgctagaccggccccactcgttaaat
cgtcatcctaacggtattggggctccgaatttctttcaaaaagatatgaaaggtaagcag
cctcaatggttggaaacctatacagactatagcgagtctactaagactaatgtagaatac
ctggtatgtacaaacgaagcgtcgctgatctatatggctaatttgggctgtattgaaatg
aatccttggcattccagagttaatagctggcagtatccagattggtgtctcattgacctg
gatcctgaaggcgtaagttttaatacggtaattgaagtggcacaggtaattaagaagatt
ctggatgcaagtggcgcaaaaggctattgtaaaacatcgggcgccacaggtatgcatatt
tatattccattgggcgcaaagtatgattttgaccaaagcaagcagttggcagaattgatc
tgtaaattagtgcaacaggagatgcccaatagtaccagcatggagcgcagtcctgctaag
cgcaaagaaaaagtgtatctggattttctgcaaaataaggaaacgcaaacagctgctgcc
ccatactctatccgtcctaggcagggggcttctgtttctacccccttacattgggatgaa
gtaaaaaaaggacttgcacctactgactatactatcaaaaatatttatgaaagggtgaag
gctgaaggtgatttatttaagccagttttaggaagaggtattaacttggaaaaagtgatc
cagcaattgattacgattctgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (45)   

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