KEGG   Fomitiporia mediterranea: FOMMEDRAFT_140284
Entry
FOMMEDRAFT_140284 CDS       T03132                                 
Name
(RefSeq) AtMMH-1
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    FOMMEDRAFT_140284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_140284
Enzymes [BR:fme01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     FOMMEDRAFT_140284
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     FOMMEDRAFT_140284
DNA repair and recombination proteins [BR:fme03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     FOMMEDRAFT_140284
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH
Other DBs
NCBI-GeneID: 18672487
NCBI-ProteinID: XP_007265879
JGI: Fomme1_140284
Position
Unknown
AA seq 351 aa
MPELPEVHRAANFIKTHAQGKTIIKVDANEDTIVFSGTTHEEFANAVRGRTVKDVGRYGK
VFYLDLDGDGPMPVMHFGMTGNILIKGESPLTYKEGPKKSDTLWPPRFTKCILHLENPPP
APATQIAFIDPRRLGRIRLCKEPLLEPPISLLGFDPILRMPSLDDFSKSVLKRSCPVKAL
LLDQSFSAGVGNWVADEILYHSRVHPEQRCNTLSSDQVSVLYKNTSYVCQTAISVNADAD
KFPDNWLFNHRWGKGKKKHLNPLKLPSGELATIKWLKVGGRTSAFVTELQTANASKLGSD
NRKEEADEESSLTSLSELDEISPKSRPKRARKAKRAATKPTGRKRQKTERV
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgcctgagctccctgaggttcatagagcggcaaacttcataaagactcacgcccaaggc
aagaccatcattaaagtagacgcgaacgaagacactatcgtattttcgggaacgactcac
gaagaatttgcaaacgctgttcgagggaggacagtaaaagacgtaggaagatacgggaaa
gtgttctatttagatctggatggggatggtcctatgcccgttatgcatttcggtatgact
gggaatattcttatcaagggtgagagccctcttacctacaaagagggtccaaagaagagt
gacacactctggccacctcgttttactaagtgcatcctacatcttgaaaatccacctcct
gctccggcaactcaaattgcattcattgatcctcgccgcttggggcgtattcgactttgc
aaagagccattgctggaacctccgatatcacttctgggcttcgatccaatcttgcgcatg
ccatccttggatgacttttcaaaaagtgttttaaaacgatcatgtccagtaaaggctctt
ctccttgaccaatccttcagtgcgggcgtagggaactgggtggctgacgagattctgtac
cactcacgagtccaccctgaacaaagatgcaatactttatcatccgaccaggtatctgtt
ctgtacaagaatacgtcgtatgtttgccaaacagccatttctgtaaatgcggacgcggat
aaatttccggacaactggctgttcaatcatcgctggggaaagggcaagaaaaagcacctc
aatccactcaaattaccttccggggagcttgcaaccatcaaatggctaaaagtcggtggt
cgcacgtcagcgtttgtaactgagctgcagactgcaaatgcctctaagttagggagcgat
aatcgcaaagaagaggcagacgaagaaagttcgctcacatccctttccgaactcgatgaa
atttctcctaagtcgaggcccaagcgggctcgcaaagcaaagcgggcggcgacaaagcca
actggcaggaagcgtcagaaaacggaacgcgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system