KEGG   Fomitiporia mediterranea: FOMMEDRAFT_24314
Entry
FOMMEDRAFT_24314  CDS       T03132                                 
Name
(RefSeq) DEAD-domain-containing protein
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOMMEDRAFT_24314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_24314
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_24314
Enzymes [BR:fme01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FOMMEDRAFT_24314
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     FOMMEDRAFT_24314
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     FOMMEDRAFT_24314
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    FOMMEDRAFT_24314
SSDB
Motif
Pfam: DEAD Helicase_C CusS AAA_19 CMS1
Other DBs
NCBI-GeneID: 18678450
NCBI-ProteinID: XP_007272025
JGI: Fomme1_24314
UniProt: R7SG66
Position
Unknown
AA seq 533 aa
MSGVTSPSASSSTGTGSGQDWRAGLRAPPKDNRPQTEDVTATKGMEFEDMFLRRELLMGI
FEAGFERPSPIQEEAIPVALSKRDVLARAKNGTGKTAAFVIPTLQQLDVSKNRIQALLLV
PTRELALQTAQVCKILGKHLGANVMVTTGGTTLKDDIMRLSEPVHVLVGTPGRILDLASK
GVADLSECPVFVMDEADKLLSPEFTPVMEQLLSFLPESRQVMLFSATFPMIVKDFKDKHM
DSPYEINLMDELTLRGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK
KVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP
KNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIEQELGTEIQPIPAQIDRSLYVAP
AGGDEPSNQAEQQLQQQVQKQQQQQQQQQLQKQQAVRQAMSAQVAPQPQQIIYQSNGQAP
QSQQRVVPNGPMPAQLQQQQLAAAAARNQQYQAYAQVQPGVAAPRPGAQPVRR
NT seq 1602 nt   +upstreamnt  +downstreamnt
atgtcgggcgttacaagtccctcagcatcatcatcaactggaactggtagtggccaggac
tggcgggctggtctacgcgcaccaccaaaagacaaccgcccgcagacggaagatgtaaca
gcaaccaagggaatggaattcgaggacatgttcctccggcgtgagctccttatgggcatt
ttcgaggccggcttcgaacggccgtcgcctatccaagaagaagcaatccctgtagccctc
agcaagcgtgacgtcctcgcccgcgcgaagaacggtacaggtaaaactgctgcattcgtt
atacccaccctccagcaactcgatgtcagcaagaataggattcaagcgcttttgctcgta
cctactcgtgagctggcgctgcagacagcgcaggtgtgcaaaatcctcggtaagcacctt
ggtgcaaatgtcatggttacgacaggtgggacgacgctgaaggatgatatcatgcgtctg
tcggagcccgttcatgtcctagttggtacacctggccgtatccttgacctcgccagtaag
ggtgtcgcagaccttagcgagtgccccgtgtttgtgatggatgaggcggataagctcctc
tctcccgaattcacaccggtgatggagcagttactctctttccttcctgaatcgcgtcag
gttatgcttttcagcgcgaccttcccaatgattgttaaagatttcaaggataaacacatg
gactcgccgtatgaaattaatcttatggatgaacttactctacgtggtgtgacacaatat
tacgccttcgtcgaagagcgacagaaggtccattgtttaaatactttattctcaaagctt
caaatcaaccaatccattatcttctgtaactcaacgaaccgagtcgaacttctcgcaaaa
aaggtgaccgaactcggctattcatgcttctattcgcacgcgaagatgctgcaatcgcac
cgtaaccgtgtgttccacgatttccggaatggtgtctgccgcaatctcgtctgctcagac
ttgctcacccgtggtatcgatatccaggcggtcaacgtcgttatcaactttgatttcccg
aagaacagtgagacttaccttcatcgtattggtcgttctggtcgttatggtcacttgggt
cttgcgattaacctcatcacgtacgaggatcgattcaatctatataagattgagcaagaa
ttaggaacggagattcaacctattccagcccagattgacaggagtctgtacgttgctcca
gcaggaggtgacgagccgtcgaaccaggcagagcagcaattgcaacaacaggtacaaaag
caacagcaacaacagcaacaacagcagttgcagaaacagcaggctgtacgccaggcgatg
tctgcacaggttgctccacaaccgcagcagattatttatcaaagtaatgggcaggcgcct
cagtcccaacagagggtcgtccctaatggtcccatgcctgcgcaattgcagcagcagcaa
cttgcggcagcggctgcacgtaaccagcagtaccaggcatatgcgcaagttcaaccaggt
gttgctgcccctcgtcctggagcgcagcctgtgcgccgatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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