KEGG   Francisella orientalis Toba 04: OOM_0898
Entry
OOM_0898          CDS       T02112                                 
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
fna  Francisella orientalis Toba 04
Pathway
fna03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    OOM_0898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fna03400]
    OOM_0898
Enzymes [BR:fna01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     OOM_0898
DNA repair and recombination proteins [BR:fna03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     OOM_0898
SSDB
Motif
Pfam: AAA_19 AAA_30 Viral_helicase1 UvrD_C_2 AAA_11 UvrD-helicase Helicase_RecD SH3_13 UvrD_C ResIII SLFN-g3_helicase AAA_22 DEAD PhoH nSTAND3 Flavi_DEAD TrwB_AAD_bind TIP49 SRP54 AAA_12 T2SSE NTPase_1 AAA_24 NACHT FtsK_SpoIIIE PIF1 IstB_IS21 AAA_28 Terminase_6N AAA_7 AAA_16 CbiA
Other DBs
NCBI-ProteinID: AFJ43368
Position
892421..894181
AA seq 586 aa
MYKTFHQACEQLADIRAIEFFFAKEVFDLAKNLPKSSKNNCHSGLDPESLKYSENENVFF
HILIKLMHVYSHGHSCLKIADISSKTIFASEQINHSDAKVGFKMLSFDEIVSILEPLDYD
KLPIYFAKEYDSLYIKRLWNYEVEIANFIKSRTIQNTQQDNHIEEVVDKLFEPANEIDWQ
KQAVIKSLNYNFSIISGGPGTGKTTTVAKLLLAIQMLNQNQQRIALLAPTGKAAQRMMES
LNSVLSKRVDNDSYLGLSNLEAQTIHRFLGLRPNSTYVKYNEQSKAPYDVIIVDEASMLD
MNIFIKLIRAVADNTKLILIGDTNQLPSVEAGSLLANFTHHRDGDIKPYTTLLIKNYRSQ
QYINNLAAPVLKGVINIDSHQNENINFHSLRNLDNYLRDYARRYSQLEKCRDHKEALTEL
NKFRILVANKNLEIGTDKLNQKIEKFMFKLIDSSYKGKPIMITQNSYSLGLFNGDVGIIW
PDNTGKLRAYFDGKDAKAFSLNMLPKYESVYAMTIHKTQGSEFDEIVIILPAEDNEALSK
QLLYTAITRAKHKLTIISEQSSLRDIAQKDIKRNSNISELVSLSTQ
NT seq 1761 nt   +upstreamnt  +downstreamnt
atgtataagactttccatcaagcttgtgagcaattagcagatattagagctatagaattt
ttctttgctaaagaagtatttgatttggctaaaaatttacctaagagctcaaaaaacaat
tgtcattccggacttgatcctgaatctctaaaatatagtgaaaatgaaaatgtatttttc
catattttgataaagcttatgcatgtgtatagccatggtcatagctgtttgaagatagca
gatatatcaagtaaaactatttttgcttcagagcaaattaatcacagcgatgctaaagta
ggctttaaaatgctaagttttgatgaaattgtaagtattttagagcctttagattatgat
aaattacctatatattttgctaaagagtatgattccttatatatcaaaagattgtggaat
tatgaggttgaaatagctaactttataaaatctagaactatccaaaatactcaacaagat
aaccatattgaagaagttgtagataagctatttgaacctgctaatgagatagattggcaa
aaacaggcagttatcaaaagtctaaattataattttagtattatctcaggtggaccaggt
acaggtaagacaactacagttgcaaaactcttacttgctatacaaatgcttaatcaaaat
cagcaaagaatagctcttttagcaccaacgggtaaggctgctcagagaatgatggaatcc
ttaaatagtgtattaagtaaaagggtagacaatgatagttatttaggattatctaatcta
gaagctcaaactatacatagatttttaggcttaagaccaaactctacttatgttaaatat
aacgagcagtcaaaagcaccatacgatgtgattattgttgatgaagcttcgatgcttgat
atgaatatttttattaagttgattagagcagtagctgataataccaagctaattttgata
ggtgatactaatcagttaccatcagttgaggctggtagtctactggcaaactttacacac
catagagatggcgatattaagccatatacaacattgcttatcaaaaactatcgttcacaa
caatatataaataatcttgcagccccagttctaaaaggtgttattaatattgatagtcac
caaaacgagaatattaattttcatagcctaaggaatttagataattatttaagagattat
gcaagaaggtattcacagcttgaaaagtgccgtgaccacaaagaggctcttaccgagcta
aataaatttagaatacttgtggctaacaaaaatttagaaattggtacagataagttaaat
cagaaaattgagaaatttatgtttaagcttatagattctagctataagggtaaaccaatt
atgataactcaaaatagctattcattaggattgtttaatggagatgtagggattatctgg
cctgataatactggtaagcttagagcatattttgatggtaaagatgctaaggcttttagt
ctaaatatgctaccaaaatatgaaagtgtttatgcgatgacaattcataaaactcaaggt
tcagagtttgatgaaatcgtgattattcttccagcagaagataatgaagcgctaagtaaa
caacttttgtatacggctatcactagagcgaaacataaattaacgattatttctgaacaa
agtagtttaagagatattgctcagaaagatattaagagaaattcaaatattagtgaatta
gttagcttgagcactcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (32)   
   Pfam (32)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system