KEGG   Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN1210
Entry
FN1210            CDS       T00077                                 
Name
(GenBank) Metal dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
fnu  Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fnu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FN1210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fnu03019]
    FN1210
Messenger RNA biogenesis [BR:fnu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FN1210
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2
Other DBs
NCBI-ProteinID: AAL95406
UniProt: Q8R638
Position
complement(1869030..1870856)
AA seq 608 aa
MSIKDDVQHLKTKKTKKKVEKNITEKTKKQKEEVKKNEVVQNNNKKVKTSKKDLDKMYVI
PLGGLEEVGKNCTIIQYKDEIIIVDAGAIFPDENLPGIDLVIPDYTFLENNKSKVKGLFV
THGHEDHIGGIPYLYEKIEKDTVIYAGKLTNALIKSKFENFGVKKALPKMVEVGSRSKVS
VGKYFTVEFVKVTHSIADSYCLSVKTPAGHVFLTGDFKIDLTPVDNEKVDFMRLSELGEE
GVDLMLSDSTNSEVEGFTPSERSVGDAFRQEFQKATGRIVIAVFASHVHRIQQIIDTAAH
FKRKIAIDGRSLLKVFEIAPSVGRLTIPKNLLIPISSVDKYDDDEIVILCTGTQGEPLAA
LSRIAKNMHKHIALREGDTVIISSTPIPGNEKAVSTNINNILKYDVDLVFKKIAGIHVSG
HGSKEEQKLMLNLINPKHFMPVHGEYRMLKAHMRSAIETGVPKDKILLTQNGDKVEVTKE
YAKINGKVNSGEILVDGLGVGDIGSKVIKDRQQLSEDGIVIVAYSIDKETGKIVSGPEMS
TKGFVYYKDSEDTIKEAQDLLSKKINKNETYLGRDWADLKGHVRDLLSRFFYEKLKRNPI
ILPMLLEI
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgagtattaaagatgatgttcaacatttaaaaactaagaaaactaaaaagaaagtagaa
aaaaatataacagaaaaaactaaaaaacaaaaagaagaagttaaaaaaaatgaagtagtt
caaaataataacaaaaaagtcaaaacttcaaaaaaagatttggataaaatgtatgttatt
ccactaggtggtttagaagaagtcgggaaaaactgtactataattcaatataaagatgaa
ataattattgtggatgcaggagcaatatttccagatgaaaatttacctggtatagattta
gtaattccagattatacttttttagaaaataataagtctaaggttaaaggcttatttgta
acacatggacatgaggatcatattggtggaattccttatctatatgaaaaaatagaaaaa
gatacagtaatttatgctgggaaattgacaaatgctttgattaaatctaaatttgaaaat
tttggagtaaaaaaagctttaccaaaaatggttgaagttggttcaagaagtaaagtaagt
gttggaaagtattttacagttgaatttgtaaaagtaacacactcaatagcagattcatat
tgtttatctgtaaaaacaccagcaggacatgtatttttaacaggagattttaaaatagat
ttaactcctgttgacaatgaaaaagtagattttatgagattatcagaattaggtgaagaa
ggggtagatttaatgctatcagattcaactaactctgaggtcgaaggttttactccttct
gaaagaagtgttggagatgcttttagacaagaatttcaaaaagctactggaagaatagtt
atagcagtatttgcctcacatgttcatagaatacaacaaattatagatacagcagcacat
tttaaaagaaaaattgctattgatggaagaagcctattaaaagtatttgaaatagcaccc
agtgttggaagattaactatacctaaaaatttacttattcctatatcatcagttgataaa
tatgatgatgatgaaattgtaatattatgtacaggcacacaaggagaaccattggcagct
ctttcaagaatagctaaaaatatgcataaacatatagctttaagagaaggagatactgta
ataatttcatctactcctataccaggaaatgaaaaagcagtttcaacaaatataaataac
attttaaaatatgatgttgatttagtttttaaaaagattgcaggtatacatgtatcagga
catggtagtaaagaagaacaaaaattaatgttaaatttaataaatccaaaacattttatg
ccagttcatggcgaatatagaatgcttaaagcacatatgagatcagctattgaaacagga
gtgccaaaggataaaattcttttaactcaaaatggagataaagttgaagttacaaaagaa
tatgcaaaaataaatggtaaagtaaattctggtgaaatcctagttgatggtttaggtgtt
ggagatattggaagtaaggttataaaagatagacaacaattatcagaagatggaatagtt
atagttgcatattctattgataaagaaacaggaaaaatagtctcaggtcctgaaatgtca
acaaaaggttttgtatattataaagattcagaagatactataaaagaagcacaagattta
ttaagtaaaaaaatcaataaaaatgaaacttacttaggtagggattgggcagatttaaaa
ggacatgtaagagatttactatcaagatttttctatgaaaaattaaaaagaaacccaatt
attttacctatgctattagaaatataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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