KEGG   Flavonifractor plautii: A4U99_00335
Entry
A4U99_00335       CDS       T04429                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
fpla  Flavonifractor plautii
Pathway
fpla03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fpla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    A4U99_00335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpla03400]
    A4U99_00335
Enzymes [BR:fpla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A4U99_00335
DNA repair and recombination proteins [BR:fpla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      A4U99_00335
SSDB
Motif
Pfam: DEAD TRCF Helicase_C CarD_TRCF_RID UvrB_inter ResIII AAA_22 RecG_dom3_C MFD_D3
Other DBs
NCBI-ProteinID: ANU39601
UniProt: A0A1C7FIF9
Position
64226..67738
AA seq 1170 aa
MKPLLSALNDIPEYRSLLAAIDNGACPAAFSGLSAVHRAHFAAGIRQELNRPVVVVCADE
GEAERMARDLAALSGEEVRTLSAREFTFHNAAVVSRQYEHRRLSTLRALAAGECPLLVCT
VESILQRTIPKTLLTQAAQVVRMGERHDLGELAGTLAAAGYTRCEQVEGVGQFALRGGIL
DFFSPAHPKPVRVEFFGDEIDAMGLFDPDTQRRIENLGAAEILPAAEVLPQFTPGGYGGL
LEGLDRLISQAKRRKGNETLVQTLEEDRERLAASTAFPAMDRYIALIYPVMATAADYFPE
DAVVVLSESPRVAERGKSYLWQLGEDAKALMERGELAGELADFARTFEELTEVLADWPVC
YLDAFTSSRYPQRPRTLLNLLTKQLPSYGASLETAVSDLAHYVSDGFRTVVLVSSEQRAL
NLQALLREQKMTTAVDFQLHELPGYGKAVIAVGGLTAGMEYPVGRFAVLTEGQSLLGKKR
RSKPVTNRQKLGSYADLSPGDLVVHEHHGVGRFLEMTKMTVDGVQKDYVKIAYAGADVLY
VPATQLDLVSKYIGSGEDAQETRKLSRLGGTDWEKAKTRAKKAVKDLAKGLIQLYAERQR
QPGFAFSPDSPWMKEFEDEFEYAETDDQLRCIAEIKQDMEQARPMDRLLCGDVGYGKTEV
AFRAIMKCVLDGKQAAILVPTTVLARQHYLTAKQRFAKYPVEIDVVSRFRTQTQMKDTLR
RLEQGGIDLLIGTHRLFQKDVKFKDLGLLVIDEEQRFGVQHKEKLKELSKQVDVLTLSAT
PIPRTLNMALSGIRDMSTLEEPPMDRQPVQTYVLEHDWGVLSDAMRQELERGGQVYYLHN
RVETITRTAARIKEMLGEDVAVAVAHGKMSQEELNDVMTRMSDGEVDVLVCTTIIETGID
IANANTLIIEDADHMGLAQLHQIRGRVGRSTRRAYAYLTYRRGKVLTEVASKRLGAIREF
AEFGSGFKIAMRDLEIRGAGNVLGPEQSGFLLSVGYDMYLKLLEEAVLEERGEKPERPTE
CAADLSVAASIPDRYVPSPEQRMDLYRRIAAIRSEADADDVMDELIDRYGDPPRTVNNLI
SVALLRADAARNGISQIDQKGANLNFYLDQFDLQRVSALCGLEKYRSRLLFSAGERPYLA
LRLKKGEDALKFGRRLVEDYAKTAPDQTEG
NT seq 3513 nt   +upstreamnt  +downstreamnt
atgaagccactgctctccgccctcaacgacatacctgaataccgctctctactggcggcc
atcgacaacggggcctgtccggcggccttttccgggctgtcggcggtgcaccgcgcccat
tttgccgcgggcatccgccaggagctgaaccgccccgtggtggtggtgtgcgccgacgag
ggggaggccgagcgcatggccagggatctggccgccctgtcgggggaggaggtgcgcaca
ctctctgcccgggagttcaccttccacaacgccgcggtggtgtcccggcagtacgagcac
cggcggctgtccaccctgcgggcgctggcggcgggggagtgccccctgctggtctgtacg
gtggagtctattctccagcgcaccattcccaaaaccctgctgacccaggcggcccaggtg
gtgcggatgggagagcggcacgacctgggggagctggccggcaccctggccgccgcgggc
tacacccgctgcgagcaggtggagggcgtgggccagttcgccctgcggggaggcatcctg
gactttttctccccggcccaccccaagcccgtccgggtggagttcttcggggacgagatc
gacgccatgggcctcttcgatcccgacacccagcggcgcatcgagaacctcggcgcggcg
gagatcctgccggcggcggaggtgctgccccagtttacccctggcgggtacggcgggctg
ctggaggggctggaccgtctcatttcccaggcaaagcgccgcaaggggaacgagacactg
gtgcagacgctggaggaggaccgggagcggctggcggccagcacggccttcccggccatg
gaccgctacatcgccctgatctatcccgtcatggccacggcggcggattacttccccgag
gacgcggtggtggtgctcagcgagagcccccgggtggccgagcggggaaagagctacctg
tggcagttgggagaggacgccaaggccctgatggagcggggagagctggccggggagctg
gctgacttcgcccgcacctttgaggagctgaccgaggtgttggccgactggccggtctgc
tacctggacgccttcacctcctcccggtacccccagcggccccgcaccctgctcaacctg
ctgaccaagcagctcccctcttacggcgccagcctggagaccgccgtctccgacctggcc
cactatgtctccgacggattccgcaccgtggtactggtgagcagcgagcagcgtgccctc
aacctccaggccctcctgcgggagcagaagatgaccaccgccgtggatttccagctccac
gagctgcccggctacggcaaggcggtgattgccgtgggggggctcaccgccggcatggag
tacccggtggggcgcttcgccgtgctcaccgaggggcagtccctgctgggcaaaaagcgc
aggagcaagccggtgaccaaccggcagaagctgggctcctacgccgacctgtctcccggc
gacctggtggtacacgagcaccacggcgtgggccgcttcctggagatgaccaagatgacg
gtggacggggtgcagaaggactacgtcaagatcgcctacgccggggccgacgtgctctac
gtccccgccacccagctcgacctggtgagcaagtacatcggctccggggaggacgcccag
gagacccgcaagctctccaggctggggggcaccgactgggagaaggccaagacccgggcc
aagaaggccgtcaaggatctggccaaggggctcattcagctctatgccgagcggcagcgc
cagcccggcttcgccttctcccccgattcgccctggatgaaggagtttgaggacgagttc
gagtacgccgaaaccgacgatcagctccgctgcatcgccgagatcaagcaggatatggaa
caggcccggcccatggaccggctgctgtgcggcgacgtgggctacggcaagacggaggtg
gccttccgggccatcatgaagtgtgtgctggacggcaaacaggccgccatcctggtgccc
accaccgtgctggcccggcagcactacctgacggccaagcagcgctttgccaagtacccg
gtggagatcgacgtggtcagccgcttccgcacccagacccagatgaaggacaccctgcgg
cggctggagcaggggggcatcgatctgctgatcggcacccaccgcctcttccagaaggac
gtgaaatttaaggatctgggcctgctggtcattgacgaggagcagcgcttcggcgtccag
cacaaggagaagctcaaggagctgtccaagcaggtggacgtgctcaccctctccgccacc
cccatcccccggacgttgaatatggccctctccggcatccgggacatgtccaccctggag
gagccgcccatggaccgccagccggtacagacctatgtgctggagcacgactggggggtg
ctctccgacgccatgcgccaggagctggagcggggcggccaggtgtactacctccacaac
cgggtggagaccatcacccgcaccgccgcccgcatcaaggagatgctgggggaggacgtg
gctgtggcggtggcccacggcaagatgagccaggaggagctcaacgacgtgatgacccgc
atgagcgacggcgaggtggacgtgctggtgtgcaccaccatcatcgagacgggcatcgac
atcgccaacgccaacaccctgatcattgaggacgccgaccacatgggcctggcccagctc
caccagatccgcggccgggtaggccgctccacgcgcagggcttacgcctacctgacctac
cgccggggcaaagtgctcaccgaggtggcctccaagcgcctgggggccatccgggagttt
gccgagttcggctccggcttcaaaatcgccatgcgtgacctggagatccggggggcgggc
aatgtgctggggccggagcagagcggattcctgctcagcgtgggctatgacatgtacctc
aagctgctggaggaggcggtactggaggagcggggcgagaagccggagcgccccaccgag
tgcgccgccgatctcagtgtggccgcctccatcccagaccgctatgtgccctcgccggag
cagcggatggacctctaccgccgcatcgccgccatccgctccgaggcggacgccgacgac
gtgatggatgagctcatcgaccgctacggcgacccgccccgcacggtcaacaacctcatc
tccgtggctctcctccgcgccgacgccgcccggaacgggatctcccagattgaccagaag
ggcgccaacctgaatttctatctggaccagttcgatctccagcgggtgagcgccctgtgc
ggcctggagaagtaccgctcccgcctgctcttctccgccggggagaggccctacctggcc
ctgcggctcaaaaagggggaggacgccctgaaatttggccgcaggctggtggaggactat
gcgaagaccgccccggatcagacagagggatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (160)   
   KEGG ORTHOLOGY (1)   
   RefGene (157)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (176)   

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