KEGG   Fictibacillus phosphorivorans: ABE65_008930
Entry
ABE65_008930      CDS       T04282                                 
Name
(GenBank) Zn-dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
fpn  Fictibacillus phosphorivorans
Pathway
fpn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fpn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABE65_008930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fpn03019]
    ABE65_008930
Messenger RNA biogenesis [BR:fpn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABE65_008930
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6 BFN_dom
Other DBs
NCBI-ProteinID: ANC76920
UniProt: A0A160IMI9
Position
1737947..1739614
AA seq 555 aa
MSKQNRDKIKVFALGGVGEIGKNMYVVDTGEEIFVMDSGLMFPQEEMLGIDIVIPDVTYL
KENLERVTGIFLTHAHEDHIGGLPYVLRQVPVPVYGTRLTLGLVEAKLKEAGLLRSTELN
LIETNQKLSFNSAKVSFFHVNHSIPDAVGIAIHTSQGIIANTGDFKIDHTPIDGQHTEFG
KISALAEEGVLCLLSDSTNAERPGSTGPEAQVGQEILDVFQAAKGRIIIASFASNVHRVQ
QVMNAAAKTNRKVAVNGRSMVKVVDIASQLGYLTIEKDLLVTIDQANDYSDEKVVILTTG
SQGESMAALSRMAQKSHKQIALRPSDTVVIAATPIPGNETSVAKMVDKLMRTGADVIFGQ
KKVHVSGHGSAEELKFMLSMMKPKYFMPVHGEYKMQKAHQKLAIEVGVEKDNIFIVDKGE
VVEFANGFAQKTGKVPSGNVLVDGLGVGDIGNIVLRDRKLLSQDGILVVVVTISKDSHKL
ISGPEIISRGFVYVRESEALLQEANTKVRDVLEKCMNENMKEWSSLKSNVRDTLSQYLFE
KTKRRPMIMPIIMEI
NT seq 1668 nt   +upstreamnt  +downstreamnt
ttgtcaaaacaaaatagagataaaattaaagtttttgccctgggcggagtcggtgagatc
ggcaaaaacatgtatgtcgtggacacaggtgaagaaatctttgtcatggactcaggtctg
atgtttcctcaagaggaaatgcttggaatcgatatcgtcataccagatgtgacttacttg
aaggaaaacctagagcgtgtgactggaatcttcttaacacatgcccatgaagatcatatc
ggcggacttccatatgttttaagacaggtacctgtgcctgtatatggaactcgtttaacg
ttaggacttgtagaagcaaaactaaaagaagcgggactattgcgttccacagaattaaat
ttgatcgaaacgaaccaaaagctatcatttaacagtgcgaaggtaagcttcttccacgta
aatcacagtattccagatgcagtaggaattgcaattcacacgtcacagggaattattgca
aatactggtgattttaagatcgatcatacaccaatcgatggacagcatactgaatttgga
aaaatttcagcattggctgaagaaggtgtactgtgtttgctatcagatagtacgaacgca
gaacgaccaggctctacaggtccagaagcacaagttggacaagagatccttgatgttttc
caagcggcaaaaggaagaattatcatagcttcttttgcttcaaatgtacaccgtgttcag
caagttatgaacgctgctgcaaaaacaaacagaaaagtagctgttaacggaagaagtatg
gtgaaagttgttgatatcgcttcacaacttgggtacttgacgatcgaaaaagatctatta
gtaacgatcgatcaagcaaacgattacagtgatgaaaaagtagtcatcttaacaacaggt
agccaaggtgaatcgatggcagcgttgtctagaatggcacaaaaatcacacaaacagatc
gctcttcgtccttcagatacagtcgtaattgccgctaccccgatacctggcaatgaaact
tcagttgcgaagatggttgataaactgatgcgtacaggggcagatgttatctttggtcag
aaaaaggtccacgtatccggacatggtagtgctgaagaacttaagttcatgcttagtatg
atgaaaccgaaatacttcatgccagttcatggtgaatataagatgcaaaaagcgcatcaa
aaattggcgatcgaagttggagttgaaaaagacaacatctttatcgtggataaaggtgaa
gtggtagagttcgctaacggattcgctcaaaaaacaggtaaagtaccttcaggaaacgta
ttagtagatggtcttggagtaggagatattggaaacatcgtacttcgtgatcgtaaacta
ttatctcaagatggaattttagtggtcgttgttacgatcagtaaagattctcataagctg
atttcaggtcctgagatcatatcaagaggctttgtgtacgttcgtgaaagtgaagctctt
cttcaagaagcaaatacaaaagttcgtgacgtacttgaaaagtgcatgaacgaaaatatg
aaagaatggtctagtcttaagtcaaacgttagagatacattaagtcagtatctgttcgaa
aaaacgaagagaagaccaatgatcatgccgatcattatggaaatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system