KEGG   Flavobacterium psychrophilum 950106-1/1: IB65_09220
Entry
IB65_09220        CDS       T03412                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fpq  Flavobacterium psychrophilum 950106-1/1
Pathway
fpq03030  DNA replication
fpq03410  Base excision repair
fpq03420  Nucleotide excision repair
fpq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fpq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IB65_09220
   03410 Base excision repair
    IB65_09220
   03420 Nucleotide excision repair
    IB65_09220
   03430 Mismatch repair
    IB65_09220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fpq03032]
    IB65_09220
   03400 DNA repair and recombination proteins [BR:fpq03400]
    IB65_09220
Enzymes [BR:fpq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     IB65_09220
DNA replication proteins [BR:fpq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     IB65_09220
DNA repair and recombination proteins [BR:fpq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     IB65_09220
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IB65_09220
   MMR (mismatch excision repair)
    DNA ligase
     IB65_09220
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      IB65_09220
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD BRCT_2 PTCB-BRCT EcoRI RNA_ligase zf-C4_Topoisom GspL_C
Other DBs
NCBI-ProteinID: AIT66026
UniProt: A0A076P2F6
Position
complement(1975208..1977208)
AA seq 666 aa
MTVLQKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYFDENSPTQR
VGGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKALGDVPLEYICELKYDGASIS
ITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPFQSHFEGLEK
ARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGYTAK
SPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPECQTKLERKEGEANHY
CPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDNGLVKNYADLYDLSVEQILPL
ERMAQKSAENLVQGVQNSKNIPFENVLFALGIRYVGETVAKKLAKHYKNIDAIANANLLE
LVMVDEIGDKIAQSVVEFFDNQENISVLERLKNNGIQLAISEENNTVVSNKLLGKIFVVS
GVFEIYSRDELKKAIEDNGGKVGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDF
SALLTS
NT seq 2001 nt   +upstreamnt  +downstreamnt
atgaccgttttacaaaaaatacaatcattgcgtgaggagcttaatctccacaattataat
tattacgttttagataatcctacgatttcagattatgattttgatgtaaaactaactgat
cttcagtctttagaaaaaaataacccagaatatttcgacgaaaattcacccacacaacga
gttggtggtacaattacaaaaaacttcgaaaccctaaaacacgattacagaatgtattcg
ttagacaattcttattcgaaagaagatttgttagattgggaaaataggattcaaaaagca
cttggcgatgtaccgttagaatatatttgtgagctaaaatacgatggcgcctctatttct
attacttacgaaaacggtcgattggttcgagcggtaactcgtggcgatggttttcagggt
gatgatgtgaccaataatattaaaactataaaagcagttccaataaaactgaaaggcgat
tttcctgaaaaatttgacattcgtggagaaattattttgccctttgctggtttcgaaaaa
atgaatcaagatttgatagaaattggggaaactccttattctaacccaagaaatacagct
tcgggaagtttaaaattgcaggatagtgccgaagtggcaaaacgtcccttagattgtttg
ctgtattcattaatcggaaataatttgccatttcaatctcattttgagggattagaaaaa
gctagactttggggattcaaagttccaaaacaaagtcatttggctaaaaacatgaatgaa
gttttcgatttcataaatatttgggataaaaataggcatactttaccttacgaaacagat
ggggtagtcataaaagtaaatgatttgcacttgcaagatgagttaggttataccgcaaaa
tcaccacgttgggcaatagcatataagtttaaatcggaacaagtttttacacaattaaat
tcaatttcatatcaagttgggagaacaggatctatcacaccagtggcaaatctagaacct
gtacagttagcaggaacgattgtaaaacgtgcttctttgcacaatgcagaccagatagaa
aaattagatattagaataaatgataccgtttttgtagaaaaaggaggcgaaattatccct
aaaattattggtgtcgatttacaaaaaaggccttcaaattcccaaaagacggcttatatt
acacattgtccagaatgtcaaactaaattagaaagaaaagaaggagaagccaatcattat
tgtcctaatttttatggttgtcggccacaaattataggtagaatacagcattatatttcc
agaaaagccatggatattgaaggtttgggaggagaaacggttgctttattatatgataat
ggattggtaaaaaactatgccgatttgtatgatttatcagtagaacaaattttgccattg
gaaagaatggcacaaaaaagtgccgaaaatttagtacaaggtgttcagaattctaaaaat
attcctttcgaaaatgttttgtttgcactcgggattcgctatgtaggggaaacggttgct
aaaaagttagccaaacattacaaaaatattgatgctattgctaatgctaatttactcgaa
ttggtcatggtagatgaaattggagataaaattgcacaaagtgtagtcgaatttttcgat
aatcaggaaaatataagtgttctagagaggttaaaaaataacggaattcagttagcaatc
tctgaagaaaataatacagttgtttcgaataagcttcttggtaaaatatttgttgtttcg
ggagtttttgagatttattctcgtgacgagttaaaaaaagcaatcgaggataatggtggt
aaagtggggagttctatttctgcaaagacaaattatgtaattgcagggcaaaacatgggg
ccagcaaaattagaaaaagcaaaccaactaaaagtatcaattattagtgaaagtgatttt
agtgctttattaacttcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system