KEGG   Francisella uliginis: F7310_04135
Entry
F7310_04135       CDS       T05017                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
frx  Francisella uliginis
Pathway
frx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:frx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    F7310_04135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:frx03400]
    F7310_04135
Enzymes [BR:frx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     F7310_04135
DNA repair and recombination proteins [BR:frx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      F7310_04135
SSDB
Motif
Pfam: DEAD Helicase_C TRCF UvrB_inter CarD_TRCF_RID MFD_D3 ResIII ERCC3_RAD25_C AAA_22 Glyco_tran_WecG RecG_dom3_C
Other DBs
NCBI-ProteinID: API86595
UniProt: A0A1L4BRY7
Position
complement(851546..854965)
AA seq 1139 aa
MLNNQISAKDTIVSNAYGSSFSILFNEYLKQNSEFNLIITEDSQQAHKIYDELKYLNKDS
KIEVLYFPNLEILPYDRFSAAIDIISRRQEILHKLTQSPKNAVVVTSISNTLRKLAPAKF
IKEHSLILKTRQILDITKQKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIFPVGSKIAYRI
DLFDDEIDTIKELDTETQRSGKEIKSINIMPSHELIYDNQNTNLALEKLESFCGENSLNS
TIATYIENNEYFNGIEYYLPLFYTKLTSIFDYLPQPANVHLIDNISNSIEAFTEEVRFRY
NELKHDIDRPILNYQELFYSQKEIKTFYEKYPHIKWFQQTKSKSKTLKVNHLDKISANYK
LANPFRDLRQLLDKSKFKKVIFSTDSNGRAEVLLEHLNKLQLNIKIAKSFDDALTLDDKF
CLIVSPFQEGVIIDNQIALITEADLFPEHIQNTVKISEHDHHPTVDLKDLTDLKPGMHVV
HIDHGIGRYEGLESIELNGKKDEFILLLYANNAKIYVPITSLNLISIYNSSLTEKIALNK
LGSDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEDYLRFCADFPYEETPD
QLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQ
HYNSFRDRFANTAVNIEVITRSKTAKAQEQLFENLKKGTVDIIIGTHKLISSKIDFKNLG
LLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRL
SVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHGQ
MSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVG
RAHHQAYAYMLIPSEAGITKDAVKRLEAIGSTESLGGGFTLANHDLEIRGAGEILGKEQS
GNIDGIGLNLYMDLLDKTIANLKAGKELNIEEVINSTVCEVELNIPTLIPDYYIHDVNTR
LNIYKRISKADHKDLVNIKIELIDRFGRLPVEVIYLLKIAHIKIDAVALGIGQIKMFATS
GKINFSDTTKFEPQKIIKLIQSQPADFRLTKEQDLLITKTTKTAEQRIEFVENFLKKIS
NT seq 3420 nt   +upstreamnt  +downstreamnt
atgctcaataaccaaatatctgcaaaagatactattgtatctaatgcttatggatcatct
tttagtattttatttaatgaatacctaaaacaaaatagtgaatttaatctaataattact
gaagactctcaacaagcacataaaatatatgatgagctaaaatatctaaataaagattca
aaaattgaagttttatactttcctaatcttgaaatacttccttatgatagattttcagct
gctatagatattatatcaagacgccaagagattttgcataagcttacacaaagccctaag
aatgctgttgttgtaacaagtatctcaaatactttacgcaagctagctccagctaaattt
ataaaagagcatagtttaatactcaagacgaggcagatattagacataactaagcaaaaa
atgctcctaacagaagcaggatatactctagtaaataacgtatttgaaaaaggcgaattt
agtattcgtggtagtattatcgacatattcccagttggctcaaaaatagcctatcgaata
gatttatttgatgatgaaattgatactatcaaagagcttgatacagaaactcaacgctct
ggtaaagaaataaaatcaatcaatattatgccatctcatgagttgatttatgataaccaa
aatactaacttagcattagaaaaacttgagtctttctgcggtgagaactctctaaactca
actattgcaacatatatagaaaacaatgaatacttcaatggtatagaatattatctacca
ttattttatacaaagcttacaagcatttttgattatctacctcaacctgctaatgttcat
ttaatagataatatcagtaactctatagaagctttcacagaagaagttaggtttagatat
aatgaacttaaacatgatattgatagaccaatactaaattatcaagagcttttttattct
caaaaagaaataaaaactttctatgaaaaatatccacatataaaatggtttcagcaaaca
aagtctaaatcaaaaactttaaaagtaaatcatttagataaaatatcagccaactacaaa
cttgcaaatccttttagagacctacgacaactattagataaatctaaatttaaaaaagtt
attttctctactgactcaaatgggcgtgccgaagttcttctagaacatttaaataaacta
cagctaaacattaaaattgctaagagttttgatgatgctcttacacttgatgataagttt
tgtttaatagtttcacctttccaagaaggtgtaattatagataatcaaattgccttaatt
acagaagcagatttatttccagagcatattcaaaatactgttaaaatctctgaacatgat
catcaccctactgttgatttaaaagatctaacagatctaaaacctgggatgcatgttgtc
catatagatcatggtataggtcgttatgaaggtttagaaagtatagagcttaatggtaag
aaagatgagtttatcttacttctatatgcaaataatgccaaaatctatgtgccgataaca
tcattaaacttgatctcaatctataactcatctttaactgagaaaatagctctaaacaag
cttggttcagataaatggaaaaaacaaaaagaaaaaactatcaaaaaaattattgatgtt
gcagcaaatcttctagaaatctatgccaaaagagaaatgcgccaaggttttagtaattct
ctagatgaagaagattatctaagattttgtgctgattttccttatgaagaaaccccagat
cagcttttagcaatcaatgatgttttcaaagatatgatttcagcaaaacctatggataga
ctaatttgtggtgatgttggctttggtaaaactgaaattgcaatgcgagcagctttttta
gctacgcaaaatcaaaaacaagtagcaatactagttcctacaacaatcttagctcaacaa
cattataatagctttagagatagatttgctaatactgctgtaaatattgaagttataact
cgttcaaaaacagctaaagctcaagaacagctttttgagaaccttaaaaaaggtactgtt
gatataattattgggacacataaattaatatcatcaaaaattgattttaaaaatctcggt
ctactaattatagatgaagaacatcgttttggtgtcgctcaaaaagaaaaactaaaatct
ttaaaagcagaaattgatattttaacaatgtcagccactccaatacctcgtagtttaagt
atggcattttctgctttgagagacttatcaattatagcttctcctccagcgaaacgctta
tctgtgaaaacatttgttaaagaatatgataacaatattattcgagaagctgtaagtcgt
gaaactattcgtggtggacagatattttacttatataataaagtagaaactattcaaaag
aagaaagagattctccaagagttattcccgcgtctaagaatagctatcgctcatggtcaa
atgagtgaaaaagaaatccagaaaatcatgtttgactttaaacataataaatatcatatt
ctactttgtactacaatcattgagactggtattgatataccaaacgcaaacacattgatt
atagaagatgctaataatctaggtcttgcacaacttcatcagcttagaggtagagttggt
agggctcatcatcaagcttatgcttatatgcttatacctagtgaagctggtattactaaa
gatgctgtcaaaagactagaagctattggtagcacagaatctctaggtggtggctttacg
ttagctaatcacgatttagagattcgtggtgctggggaaatattaggtaaagagcaaagt
ggtaatatagatggtattggtctaaatctttatatggatctattagataaaacaatcgct
aatctaaaagctggaaaagagttaaatattgaggaggtaattaattcaactgtatgtgaa
gttgagcttaatatccctactctaattcctgattactatatccatgatgtaaatactcga
ttaaatatttataagcgtatttcaaaagctgaccataaagatctagtaaacatcaaaatt
gaacttatagaccgttttggtagactaccagtagaagtcatatatcttttaaaaattgct
catataaagatagatgcagttgcattaggaattggtcagattaagatgtttgctacttct
gggaaaattaacttctctgatacaacaaaatttgaacctcagaaaataatcaaattaata
cagtctcagcctgctgactttagactcacaaaagagcaagatttattaattacaaaaact
actaaaactgccgagcaaagaattgaatttgttgagaattttctgaagaagataagttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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