KEGG   Candidatus Fokinia solitaria: Fsol_00115
Entry
Fsol_00115        CDS       T05415                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fso  Candidatus Fokinia solitaria
Pathway
fso03030  DNA replication
fso03410  Base excision repair
fso03420  Nucleotide excision repair
fso03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fso00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Fsol_00115
   03410 Base excision repair
    Fsol_00115
   03420 Nucleotide excision repair
    Fsol_00115
   03430 Mismatch repair
    Fsol_00115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fso03032]
    Fsol_00115
   03400 DNA repair and recombination proteins [BR:fso03400]
    Fsol_00115
Enzymes [BR:fso01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Fsol_00115
DNA replication proteins [BR:fso03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Fsol_00115
DNA repair and recombination proteins [BR:fso03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Fsol_00115
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Fsol_00115
   MMR (mismatch excision repair)
    DNA ligase
     Fsol_00115
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Fsol_00115
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 DNA_ligase_ZBD SHOCT HHH_8 ComX DUF5669
Other DBs
NCBI-ProteinID: AWD32924
UniProt: A0A2U8BRF0
Position
complement(114036..116300)
AA seq 754 aa
MSLIPLITTVKTLEKALRKYNRAYYVQNQSLISDSEYDERKKKLIQYYEMLFKMIDEIPE
ASDLRADYKVTVQKMYDNGVISTVGFLTNKGFEKKSHVKRMYSLNNAFNEEELDEWLQRI
ATLLKKKEQDISLLYPICCETKVDGLSFSALYKNGKLTHILTRGDGENGEDVTRNVHLIA
NFPSFLESGCHYEEFEVRGEIFIKNSVFEEINSSLRKNGEKPFSTTRNAASGILRQLKNR
FENDKILSYLVWGSATLQEDKMHYTEVRKYLTTIGFDVISEFKIANSINEIREFYHDISV
AQNNKKISYDTDGIVCKINNLEIQDALGYTATAPRGAMAYKFSSDSYETKLLAIVPQVGK
HGNLTPIAVVEPIIISGTTITRVTLHNFAEITKRDIRIGDIITVKKSGGVIPCICDVLYS
ERDEKAELPKFSSITECPFCGHSLVRETDATLICPNISCCERTIQRMIHFVSKDCMNIAG
FGEKQIRQLYQAEIIKGFVDILKIATDNAKIESILRLDGWREESVQNLIYAIKKSYNVSL
CNLILSLCIPHVGKESAKIIASQISSLKDLMRKISEGTLSMKGIGEKTAASIKNFFTAQE
NIALIHALDDILSIEQHSSLKEMVRDKTLHYANSISEKKAFPLKQHSPLRKRMKDELIRE
MVRNKALHYINSISEKKAFLLKQHSSLKKRMEDELKDIIVKIEHDRKQSSSPDEIMEDAL
IGSGLQEASRGTEKDLSACFPLATEVRELTAIST
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgagtcttattccactgataacaacagttaaaacgctggagaaagcactcagaaaatac
aacagagcgtactacgtacaaaatcaatcactcatctcagacagcgagtatgatgaaaga
aagaaaaagctcattcagtattatgagatgctattcaagatgattgatgaaataccggaa
gcatctgatctaagagcagattacaaagtaacagtacagaagatgtacgataacggtgtc
atcagtacagtaggctttctcacaaataaaggatttgaaaagaaatctcatgtaaaacga
atgtactcattaaataacgcatttaacgaggaagaattagacgagtggttacagagaatt
gcaactctattgaaaaagaaagaacaggacataagtctgctgtaccctatatgctgcgaa
acaaaagtggacggtctttcgtttagcgcgctgtataagaatggaaaattgactcacatt
ctgactagaggcgatggagaaaacggagaagacgttacgagaaatgtacatttaattgcg
aattttccttcatttctagaaagtggctgtcactacgaagaatttgaagtacgtggagaa
attttcataaaaaatagtgtatttgaagaaattaatagttctttgagaaaaaatggagaa
aagcctttttccacgacaagaaatgcggcatcaggtatattaagacagttaaagaataga
ttcgaaaacgataaaatactctcatatcttgtatggggtagcgctactctgcaagaggat
aaaatgcattacaccgaagtacgaaaatatttaactacaatcggtttcgacgttatttca
gaatttaaaattgcgaatagcataaatgaaattcgagagttttatcatgatatttccgtc
gcgcaaaataataaaaaaatttcgtatgatacagatggcatagtgtgcaaaataaataac
ctcgaaatacaggatgcacttggatatacagctacagcgcctagaggtgcaatggcatat
aagttctcatcagattcttacgaaacaaaattattggccatagtgccacaggtagggaag
catggcaatctcacaccaattgcagtcgtcgaaccaatcataatatcgggtacaactatt
acgagagtaactctacataactttgcagaaattacgaagcgtgatatcagaataggagat
attatcactgtcaaaaaatctggcggagttataccgtgcatctgcgacgtattatactcc
gagagagatgagaaagcagagttgccaaaattttcaagtatcacagaatgtcctttctgt
ggtcattcattagtaagagaaacagacgcgacactgatttgtccaaatatttcatgttgt
gaaagaactatacaaaggatgatacattttgtaagcaaagattgtatgaatatagcggga
tttggtgaaaaacaaatcagacaattatatcaagcagaaattataaaagggtttgtcgat
atattaaaaattgcaactgataatgcaaaaattgagagtatattaagattggatggctgg
cgagaggagagtgtgcaaaatcttatatacgcaataaagaagtcttataatgtatcgcta
tgtaatctcatattatcattatgtattccgcatgttggtaaggaaagcgcaaagatcatc
gcttctcaaatctcttcattgaaggatctaatgagaaaaatatcagaaggaacgcttagt
atgaaaggcataggtgagaaaacagctgcctctataaagaatttcttcactgcacaagaa
aatatagcactaattcatgcattggatgacatcctctctatagaacaacattcttcattg
aaagaaatggtgagagataaaactctgcactatgcaaatagcatcagtgagaaaaaagct
ttccctctaaaacaacattctccattgaggaaaagaatgaaagatgaactgattagagaa
atggtgagaaataaagctctgcattatataaatagcatcagtgagaaaaaagctttcctt
ctaaaacaacattcttcattgaaaaaaagaatggaagatgaacttaaggatattatcgtg
aagatagaacatgaccgaaaacaatcctcttcgcctgatgaaataatggaagatgcgctg
atcggaagtggattgcaagaagcaagtcgcggtacagaaaaagatctctcagcttgcttt
ccattagcaacggaggttcgagaactaacagcaatttccacataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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