KEGG   Francisella tularensis subsp. tularensis WY96-3418: FTW_1085
Entry
FTW_1085          CDS       T00495                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ftw  Francisella tularensis subsp. tularensis WY96-3418
Pathway
ftw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ftw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    FTW_1085 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ftw03400]
    FTW_1085 (mfd)
Enzymes [BR:ftw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FTW_1085 (mfd)
DNA repair and recombination proteins [BR:ftw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      FTW_1085 (mfd)
SSDB
Motif
Pfam: DEAD Helicase_C TRCF UvrB_inter CarD_TRCF_RID MFD_D3 ResIII ERCC3_RAD25_C AAA_22 UB2H RecG_dom3_C Glyco_tran_WecG
Other DBs
NCBI-ProteinID: ABO46899
Position
1023696..1027121
AA seq 1141 aa
MLNNQISANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNN
SKVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPAS
FIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFR
IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALN
STIATYIQNNEYFSGIEFYLPLFYDKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFR
YNELKHDSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANY
KLANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEVSAK
FCLIISPFQEGMIIDKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLIDLKPGMHV
VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN
KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETP
DQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFTNTAFNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYMDLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNT
RLNIYKRISKASHQDLVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT
SGKISFSNNTKFERQKLIKLIQSQPSDFRLTKEHDLIITKVTKTAEQRIEFIENFLKKIV
Q
NT seq 3426 nt   +upstreamnt  +downstreamnt
atgcttaataaccaaatatctgctaatgatacagttgtatctaatgcttatggatctgct
tttagtattttgtttaatgaatatctcaagcaaaataatcagtttaatttaatagttact
gaagactcacaacaagcacataagatatacaaagaattaaaatatctaaataaaaataat
tcaaaggtagatatcctattttttccaaatttagaaatccttccttatgataggttctca
gcttctatagatattatctctagacgccaagaaatcctatataagatgacacaccaaccc
caaaatactctaataatcacaagtatctcaaatacactaagaaaaatagcaccagcaagt
tttatacaagagcatagttttatacttaaaacaggtgataacttagatataactaaatat
aaaatgcttcttacagaagcaggttatactttagtaaacaatgtttttgaaaaaggtgag
tttagtattcgtggtagtattattgatatatatcctatcggctcaaaagttgcttttaga
atagatctttttgataatgagattgatagtatcaaagagcttaatactgaaagtcaacgc
tctggtaatcaaatacaatcaatcaacataatgccatctcatgagctggtgtataacaat
caaaatactacttttgctttagataagctcaataaattatgtggtgataaagctcttaat
tcaactattgcgacatatatacaaaataatgaatattttagtggtattgagttttatttg
cctttgttttatgacaaactttctagtctttatgattatctaccaccatcgacaaatatt
cacttagttgataatattactaattcaattgaggctttctctgatgaagtaaaatttaga
tataatgaacttaagcatgatagtgatagaccaattctaccctttcaagaaatcttttat
tcacaacaagaaatacaagatatctaccaacaatataaaaatattaaatggtttcaacag
ccaaaatcaaaatccaaaatacttaaagtagaccatttagaaaaaatttcagcaaactac
aaacttgcaaatccattcaaagatttacaacagtttattgataaatctaattttgacaaa
gttattttctcaactgactcaaatgggcgtgctgaactacttctagagcacttaaataag
cttaatctaaatatacaaagctgtaaaaattttaatgaagctatagaagtatctgctaag
ttctgcttaataatttcgccttttcaagaaggtatgattatagacaaaaaaattgctcta
attacagaagcagatttatttcctgaacatagctataactctaccaaagtttcacagcat
gatcaccaccctactgttgatcttaaagatcttatagatctaaaaccaggaatgcatgtt
gtgcatattgatcatggtatcggtagatatgaaggtttagaaagtattgagctaaatggt
aaaaaagatgagtttatattactaagatatgcaaatgatgccaaaatctatgtaccaatc
acatcactaaatctaatctctatttataactcttcacttactgaaaagatagcattaaat
aagcttggtacagataagtggaaaaaacaaaaagaaaaaactattaaaaagattattgat
gtagcagcaaatcttctcgaaatttatgcaaaaagagaaatgcgccaaggttttagcaat
agcttagacgaagaagaataccttagattttgcgcagactttccttatgaggaaactcct
gatcaactttcagctattaatgatgtatttaaagatatgatttcagctaaacctatggat
aggctaatctgtggtgatgtaggttttggtaaaacagagattgcgatgcgagcagcattc
cttgccacacaaaatcaaaaacaagttgctattttagtacctacaacaatcttagctcaa
cagcattataatagctttaaagatagatttactaacactgcttttaatatcgaagtaatt
acccgttcaaaaactccaaaggcacagcaacaactttttgaagaccttaaaaaaggaacc
gtagacataattatcggcactcataaactaatttcatcaaaaattgactttaaaaattta
ggtttattaattattgatgaagaacatcgttttggtgtcgctcaaaaggaaaaactaaaa
tcattaaaagccgagatagatattttaactatgtctgcaacacctattccgcgtagttta
agtatggcgttttcagcactaagagacttatcaattatcgcttcaccacctgccaaacgc
ttatcagttaaaacttttgtcaaagaatatgataataatataatccgcgaagctgtaagt
cgtgaaactattcgtggtggacagattttttatctttataataaagttgaaactattcaa
aagaaaaaagaaattcttcaagagttgtttccacgcttacgtatagctatagctcatgga
caaatgagcgaaaaagaaatccaaaaagttatgtttgattttaaacataacaagtaccat
atattactatgtaccacaattattgagacaggtattgatataccaaatgctaatactcta
attattgaagatgctaacaatctaggtttagctcaacttcaccaactaagaggtagagtt
ggtcgatcacatcatcaagcttatgcatatatgctaataccaaatgaagcaagcattacc
aaagatgcactaaaaaggcttgaggctattagtaataccgaatcactaggtggtggtttt
actttagctaatcatgatttagagattcgtggcgctggtgaaatacttggagaagagcaa
agtggtaatattgatggtattggtctaaatctatatatggatctactcgataaaacaatt
gcaaatctacgagctggtaaagagctcaatatcgaagaggttattaattctacagtctgc
gaagttgagttaaatattccaacactaattcccgattattatatttatgatgtcaacact
cgactaaacatctataaacgaatttcaaaagctagtcatcaagatttagtaaatatcaaa
attgaacttatagatcgctttggcaaattacctttagaagttctttatttacttaaagta
gcacatataaaaatagatgcgattgcattaggaatttcccaaataaaaatgtttgctaca
tctggcaaaattagtttctcaaacaatacaaaatttgaacgacagaagctgataaaactt
attcaatcacaacctagtgattttagactgactaaagagcatgatttaattataacaaaa
gttacaaaaactgctgaacaaagaatagagtttatcgaaaactttttgaagaaaatagtt
caataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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