KEGG   Fragaria vesca (woodland strawberry): 101303629
Entry
101303629         CDS       T02666                                 
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
  KO
K13192  RNA-binding protein 26
Organism
fve  Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:fve00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:fve01009]
    101303629
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101303629
   03041 Spliceosome [BR:fve03041]
    101303629
Protein phosphatases and associated proteins [BR:fve01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     101303629
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     101303629
Spliceosome [BR:fve03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    101303629
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 PHM7_cyt Nup35_RRM zf_CCCH_4 RRM_3 zf-CCCH OmpH
Other DBs
NCBI-GeneID: 101303629
NCBI-ProteinID: XP_004304651
Position
LG6:37410554..37415247
AA seq 929 aa
MELNVSSPKPGGLSASDFVSDPEEKEVSDDDDDDRNHKHRRRDARSQSLERDTLDQDITR
PYRKRNKPFVNGHSFRDNDSQASTPSKYYNSTSFENFSGKFDKRRPGSASLPRAPFDLNQ
RMRANQAFPGDLGPGRGRGRDSASWSQRDSRFSSDITSQLVQQGSLPPSMFGGRGLPNVS
NPQNASWNAFGLLPGVPNGGLDTLHSIGLQGTLRPPIRSSLNLGIPRQRCRDFEERGFCL
RGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPSAHLLGKPTGPGPLPSVSASSTTLMNNK
GLHSKASKSSVTDDTSLGGTDLYDPDQPLWNNNGPETSNAILGLQSPRNDETDSLSNDDP
SDRHQARLCDNADNEYPIRTVGTAAGSQSTSVSVWGRIGSSKNRPDVKEKIDPTINYSDN
PENVTESQINIHQQHQGKRSIAEDTNSKTLNSLAKRPYDTMRTVRKPSQKALRTLFVNGI
PQKSNRREALVSHFQKFGEILDIHIPSNSERAFVQFSKREEAEAALKAPDAVMGNRFIKL
WWANRDSIPEDGPGKASMVSESSPGLTAVSVPLHSSGSSFSKDNQQSSSKGSIVHASDAS
VPSFDNSKPVISNGPKAPPLQKKLENLEQLKEELRKKQEMLDQKRNDFRRQLYKLEKQGG
PKGEADTELAAKRRKVGLAADADKVATPSSSSPTPTPVSALADEMLTDKNQSGDTVVSHS
PKASTAMTLQQSPTLKHQMIRPSVPLGTPVPLNRYKLDNRPTGFRILPPLPSGFANVTVI
KEHFVPCGDISNVELEDLESRDSSSELDISKKCSARITFATRRSAEKAFLNGKCWEGCDL
KFVWLTSSNSSNGGEKSPSTTPRAALSADIQPADKLASTTSQDTSASGDAESEQSERKDG
DEHMKLGEPSMPSSSPTSWVKESSKGDAT
NT seq 2790 nt   +upstreamnt  +downstreamnt
atggaattaaatgtttcgtctccaaaaccaggtggcctttctgcttctgattttgttagt
gatcctgaggagaaggaagtcagtgatgatgacgatgatgatcgaaatcacaaacatcgt
agacgagatgctcgttctcagtctttggagagagatacccttgatcaagatataacaagg
ccatacagaaaaaggaacaaaccttttgtaaatgggcactctttcagagataatgattct
caagcgagtacaccatcaaagtattataattccacttcgtttgagaacttttctggaaag
tttgataaaagacgcccaggttcagcatcactgcctcgagcacctttcgatttaaatcaa
aggatgcgggcaaaccaagcattccctggagaccttggtcctggtaggggaagaggacgg
gactctgcatcatggagccaacgtgattctaggttcagctctgatattacatctcagctg
gttcagcagggatcccttcctccgagtatgtttggaggacggggattgccaaatgtttcc
aatccacagaatgcgtcctggaatgcatttggattacttccaggagtaccaaacggtggc
ctggatacactgcattcaattgggttgcaaggtacactcagaccaccaatccgttcttct
ttaaatttgggcatccctcgccaaagatgtagagactttgaggagcgtgggttttgtcta
agaggggacatgtgtccaatggaacatggagtcaatcggattgttgttgaagatgtgcag
agtctttcccagttcaatcttcctgtttcacttccaagcgcacacctacttggaaaaccc
actggtcctggacctctaccatcagtcagtgcatcttcaactacattgatgaataacaaa
ggattgcatagcaaagcgagcaagtctagtgtcactgatgatacttctttgggtggaact
gacttgtatgaccctgatcaacccctgtggaacaataatggtcctgaaacctcaaatgca
attctaggccttcagtcacctaggaatgatgaaactgactccttatcaaatgatgatcct
tctgaccgtcatcaagctagattgtgtgataacgcagacaatgaatacccaattagaact
gttggtactgctgcgggttcacagagtacaagtgtgtcagtctggggcagaattggtagc
tcaaaaaacagaccagacgtgaaggagaaaattgaccctacaataaactattcagataat
cctgagaatgtaaccgagtcacaaatcaacattcatcagcaacatcaaggaaagcgtagc
attgcagaggatacaaactccaaaaccctaaactcgttagccaagagaccgtatgatact
atgcgtactgttcggaaaccatctcagaaagcattacgtactctatttgtcaacggtatt
cctcagaaaagcaacagaagggaggctcttgtttctcattttcaaaaatttggagagatt
ttggacattcatattccatcaaatagtgagcgagcttttgtccagttttccaagagagaa
gaggctgaagctgctttaaaggcacctgatgctgtaatgggtaatcgttttatcaagttg
tggtgggcaaatcgtgatagcattccagaggatggccctggcaaggctagtatggtttct
gaaagttcccctggtttgacagctgtttcagttccactccattcatctggttctagtttt
agcaaggataatcaacaatcttcttcaaagggtagtattgttcatgcatctgatgcttct
gtaccatcctttgataactctaagcctgtaatctcaaatggtcccaaggctccacctctg
cagaaaaagctagaaaatttagagcagttaaaggaggaacttcgcaagaagcaggaaatg
ctggaccagaaacggaatgactttcgtcgccagttgtacaagcttgagaaacaaggcgga
ccaaagggtgaggcagacacagagctagctgccaagagacgcaaagtgggattagcagct
gacgctgataaagttgctactccgagttcctccagtcctactcctactcctgtgtcagca
ctggctgatgagatgttgactgacaagaaccaatccggggataccgtcgtctcccatagt
cctaaagcaagtacagctatgactctacagcaatctcctaccttgaagcatcagatgatt
cgtccatcagtaccactagggactcctgttccactgaatagatacaaattagacaatcgt
cctactggatttagaattctccctcctttaccatctggatttgcaaatgttactgttatc
aaggaacactttgtaccatgtggtgatatttctaatgtggaattagaagatctggaatct
cgtgatagtagtagtgagttggacatatcaaagaaatgctcagctcgtataacttttgca
acacggcgttcagcagagaaagcatttctcaatggtaaatgctgggaagggtgtgactta
aaatttgtgtggttgacatctagtaactccagcaatggtggtgaaaaatctccatccacc
actcctagggcggcattatctgctgatattcagcctgcagataaactagcaagcactact
tcccaggatacatctgcatcaggcgatgcagaatctgaacagtctgaaagaaaagatggt
gatgagcacatgaaactgggtgaaccttccatgcctagttcaagccctacgtcttgggtg
aaagagtcatcgaaaggcgatgcaacttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (37)   

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