KEGG   Fragaria vesca (woodland strawberry): 101311491
Entry
101311491         CDS       T02666                                 
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
  KO
K03283  heat shock 70kDa protein 1/6/8
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03040  Spliceosome
fve04141  Protein processing in endoplasmic reticulum
fve04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101311491
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    101311491
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    101311491
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:fve01009]
    101311491
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fve03041]
    101311491
   03009 Ribosome biogenesis [BR:fve03009]
    101311491
   03110 Chaperones and folding catalysts [BR:fve03110]
    101311491
   04131 Membrane trafficking [BR:fve04131]
    101311491
   03051 Proteasome [BR:fve03051]
    101311491
   03029 Mitochondrial biogenesis [BR:fve03029]
    101311491
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fve04147]
    101311491
Protein phosphatases and associated proteins [BR:fve01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     101311491
Spliceosome [BR:fve03041]
 Complex B
  Other components
   Prp19 complex
    101311491
 Complex C
   Prp19-CDC5 complex
    101311491
Ribosome biogenesis [BR:fve03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    101311491
Chaperones and folding catalysts [BR:fve03110]
 Heat shock proteins
  HSP70 / DNAK
   101311491
Membrane trafficking [BR:fve04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    101311491
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    101311491
Proteasome [BR:fve03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    101311491
Mitochondrial biogenesis [BR:fve03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    101311491
Exosome [BR:fve04147]
 Exosomal proteins
  Proteins found in most exosomes
   101311491
SSDB
Motif
Pfam: HSP70 MreB_Mbl FGGY_C Hydantoinase_A Radial_spoke_3
Other DBs
NCBI-GeneID: 101311491
NCBI-ProteinID: XP_004302715
Position
LG6:complement(9315286..9318246)
AA seq 647 aa
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFTDASVQGDMKLWPFKVTSGPAEKPMIGVQYKGEEKQFAA
EEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGINVLRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIKDEKIGEKLPGADKKKIEDAIEAAIQWLDSNQLAEADEFED
KMKELESICNPIIAKMYQGSGPDGAGPVDDDVPAGSGGAGPKIEEVD
NT seq 1944 nt   +upstreamnt  +downstreamnt
atggccggcaaaggagagggaccggccatcggaatcgatctcggcaccacctactcttgc
gtcggcgtatggcaacacgaccgtgttgagatcatcgccaatgaccaggggaacaggacc
acgccgtcgtatgtggctttcaccgacaccgagaggttgatcggagatgccgctaagaac
caggtggccatgaacccaatcaacactgtttttgatgccaagcgtttgattggtcgcaga
ttcactgatgcctcagttcagggtgacatgaagttgtggccattcaaggtcacctctggc
ccagctgagaagcccatgattggagttcaatacaagggagaggagaagcagtttgctgct
gaggagatatcctccatggtcctcatcaagatgcgtgagattgccgaggcgtaccttggt
gccaccatcaagaacgcagtggtcacagtgcctgcttacttcaacgattctcagcgtcag
gccaccaaggatgctggagtcattgctggtatcaatgtcttgcgtattatcaatgaacct
acagcagctgccattgcctatggtcttgacaagaaggccaccagtgttggtgagaagaat
gtgttgatctttgaccttggaggtggtacctttgatgtctctcttcttaccattgaagag
ggtatctttgaggttaaggccacagctggtgacacccatcttggtggtgaggactttgac
aacagaatggtgaaccactttgttcaggaattcaagagaaagaacaagaaggatatcagc
ggcaaccccagggctcttaggagattgaggacatcatgtgaaagggcgaagaggaccctc
tcatccactgcccagaccaccattgaaatcgactccttgtatgagggtattgacttctac
tcaaccatcacccgtgccagatttgaggagctcaacatggacttgttcagaaagtgtatg
gagccagtagagaagtgtttgagggatgccaagatggacaagagcacagtccatgatgtt
gtgcttgttggtggatccacccgtattcccaaggttcaacaactcctccaggatttcttc
aatggcaaggagctctgcaagagcatcaaccccgatgaggccgttgcctatggtgctgca
gttcaggctgcaattctcagtggtgagggcaatgagaaggtccaggaccttcttctgttg
gatgttacccctctatctcttggtttggaaactgccggaggtgtcatgaccgtcttgatc
cccagaaatacaaccatcccaacaaagaaggaacaagtcttctctacgtactctgacaac
cagcctggtgtgctcatccaggtctatgaaggagaaagaaccagaaccagggacaacaac
ttgctcggaaagtttgagctctctggaattcccccagctcccagaggtgtgccccagatc
acagtgtgttttgacattgacgccaatggtatcttgaatgtgtcagcagaggacaagacc
accggtcaaaagaacaagatcaccatcaccaatgacaagggcaggctctcaaaggaggag
attgaaaagatggttcaagaggcagagaagtacaagtctgaggatgaagagcacaagaag
aaggttgaggccaagaacgctttggagaactacgcctacaacatgaggaacaccatcaag
gatgagaagatcggcgagaagctcccaggggccgacaagaagaagattgaggatgccatt
gaggctgccatccagtggctagacagcaaccaactcgccgaggctgatgagtttgaagac
aagatgaaggagttggagagcatctgcaacccaatcatcgccaagatgtaccagggttct
gggcctgatggtgccggcccagttgatgatgatgttccagctggaagtggcggtgcaggg
cccaagattgaggaggtcgactaa

  All links  
Ontology (9)   
   KEGG BRITE (9)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (78)   

Download RDF
DBGET integrated database retrieval system