KEGG   Fragaria vesca (woodland strawberry): 101314163
Entry
101314163         CDS       T02666                                 
Name
(RefSeq) DNA-directed RNA polymerase III subunit rpc1
  KO
K03018  DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101314163
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fve03021]
    101314163
Enzymes [BR:fve01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     101314163
Transcription machinery [BR:fve03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     101314163
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 101314163
NCBI-ProteinID: XP_004294640
Position
LG3:18622095..18636784
AA seq 1390 aa
MMKKVHAKTIAFTKEPFIEEEGHCRIAQWQFNAMSQSEISKMAATQIFLGRYYDSNQKPI
RGGLLDARLGPANKQCGDCETCGAKLSDCPGHFGYLVLAVPVFNVGYLSTVVDVLKCICK
SCSRIILDDKSRSRFLNVVRDPKKDKSVTMKLIVKKCTSMSSNNRSVKCPKCGYMNGSVK
RAQGMLAIVHGAVDDFKSVNPVMKDPKASINLQPHMLNPVKVFSLFKRMLDEDCELLNLK
SRPENLIMTTIAVPPIAIRPSVLVDGSQSNENDITERLKKIIQTNACVQQDLSEGSTTRF
LSNWEILQAEVALYINSDVRGVPYHMTANAKPLNGLVQRLKGKTGRFRGNLCGKRVEYTG
RTVISPDPNLKITEVGIPIQMAQILSYPERVSDHNIEKLRRCVANGPFKYPGALVLKCQN
GEEWSLKAGQKRMSHADNLKPGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT
LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILVASTQDF
LTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVDLPTPAVVKPIELWTGKQLYSVLVRPN
SNVRVYLNLTVREKSYSNRKTEDGREIEAMCPNDGFVYFRNSELLSGQLGKGTLGNGNKD
GLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSDILYGEKEKIIKKGY
DKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLCMQTLHWRNSPLIMS
QCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNTPAAKGFVASSFYSG
LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYDKTVRAANGGIVQFC
YGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEIVRSRLSEQDMTP
DGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATLQNIVQNISGVTPRQL
KVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK
EIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIEIVMSPRAAYVEVK
LDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHSHEKDRRKLHFHLY
YLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLFAEGKGLLAVMSTK
GVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDDRHMMLLADVMTFRGL
VLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVSESIIMGIPMPIGTGM
FKIKQRLPEM
NT seq 4173 nt   +upstreamnt  +downstreamnt
atgatgaaaaaagtccatgccaaaacaatagccttcacaaaagagcctttcattgaagaa
gaagggcactgcagaatagcacaatggcaattcaatgctatgtcccaatcagaaatcagc
aaaatggctgcaactcaaatttttctaggtcgatattacgatagcaatcaaaaaccgatc
agaggtggcttgttggatgcccgcttgggccctgcaaataagcaatgtggtgactgtgag
acttgtggtgcaaaactgtcagattgtcctggtcactttggatatttggtgcttgctgtc
cctgtttttaatgttggatatttaagtaccgttgtggacgttttgaagtgcatttgtaag
tcatgctctcgaataattttggatgacaaatcacgcagtcgctttttgaatgttgtgaga
gaccccaaaaaggataaaagtgtgacgatgaaattgatagtgaagaagtgtactagcatg
tcaagcaataatagatcagtgaagtgcccaaaatgtggatatatgaatggttcagtgaaa
agggctcaaggtatgctggcaattgttcatggtgctgttgatgactttaaatcagtgaat
cctgtcatgaaggatcccaaggcatccattaatctgcaacctcatatgcttaaccctgtt
aaagttttttctttgttcaaaaggatgcttgatgaggattgtgaacttcttaatcttaaa
agtagaccagagaaccttatcatgacaaccattgctgtgccacctatagccattcgtcct
tccgttcttgtggatggatcacagagtaatgaaaatgacattacagagaggttaaagaaa
attattcaaacaaatgcctgtgttcaacaggacctatcagaaggatctaccacaagattt
ttgtcaaattgggaaatacttcaagccgaggttgcgctgtacataaacagtgatgttcgc
ggtgtgccctatcacatgacagcaaatgccaagccattgaatggattggtgcagcgcctc
aaagggaagacggggcgttttcgtggaaacctatgtgggaagagggttgaatatactggc
agaactgttatttcgcctgaccctaatctgaaaattactgaggttggaatccctatccaa
atggcccagattttaagttatccagaacgcgtgtccgatcataatattgagaagttgagg
cggtgtgtagctaatggaccttttaagtaccctggtgccctagtgctcaaatgtcaaaat
ggcgaagaatggtccttgaaggctgggcaaaaaaggatgtctcatgctgataatctcaaa
cccggggacatagtcgatcgccacttagaagatggggacattgttcttttcaacagacaa
ccaagcttacatcggatgtctatcatgtgtcatagggcaaggattatgccttggagaaca
ttgaggtttaatgaatctgtatgcaacccttataatgctgattttgatggtgacgaaatg
aatatgcatgtgccgcaaacggaggaggctcgaactgaggctgttatgttgatgggggtg
caaaacaatctatgcactcccaaaaatggggagattttggttgcttccactcaagatttt
ttgacatcgtctttccttataacaaggaaggacacattttatgatcgtgcatctttttca
ctcatgtgttcatacatgggggatggtactgagcatgtggatttgccaacacctgctgta
gttaagccaatagagctatggacaggaaagcagctatatagcgtgttagttcgcccgaat
tcaaatgtcagagtatatctaaacctaactgttagagagaaatcctactccaacagaaag
actgaagatggaagagaaatagaagcaatgtgcccaaatgatgggtttgtctatttccgt
aacagtgagctattatctgggcaacttgggaagggcactttaggaaatggcaataaggat
ggacttttctctgttcttctcagagactacaaagctcatgctgctgcttcttgcatgaat
cgtgtagctaaattaagtgcccggtggatcggtaatcacggattctcaattgggattagt
gatgtacaacccagtgacatcttgtatggagagaaagaaaaaatcattaagaaaggttat
gacaaatgtgacgaccagattaagttgtacaaagaaggacagctacgacttgcacctggt
tgtgatgctgcccaatcacttgaatctgggattactgcagttttaaatgatattcgagac
caaactggaaagttgtgcatgcaaacgctacattggagaaacagtcccctgattatgtcc
cagtgtggttccaagggatctgctatcaatatcagtcagatggttgcgtgtgttggtcaa
caatcagttggtggtcgtcgtgcaccaaatgggttcatagatcgaagccttcctcacttt
cctagaaaagtgaatacccctgcagctaaaggctttgttgctagttccttttacagtggc
ttgacagcaacagagttcttttttcatacaatgggaggtcgagaaggccttgtggataca
gctgtcaaaactgctgatacagggtacatgtctcgtaggttgtcaaaagttctagaggac
ctctctgttcagtatgataaaacagtgcgggccgcaaatggaggtattgttcagttttgt
tatggagatgacggtatggatcctgcaatgatggaagggaaaagtggagcgccgttagac
ttctaccggttgtttttcagagccaaggccacttgccctgctggagaaagcgaaagcctt
tctcctgatgaagtgtctgaaatagtgagaagcaggctttcggaacaagatatgactcct
gatggtggttgctctatgggttttaaaagttctatagagcaattcctggatgaatatgtt
aaagcattaagaaaaacacaggaggcttttttattgaatcaaagtcctggttgggaggtg
aagtctgcaactctacagaacatcgtccaaaatatatctggtgtcactcctagacagctg
aaggtttttctagatacttgtatttctcgttatcattcaaaaaaagttgatgctggtaca
gcaattggagtaattggagctcaaagtattggcgagcctgggacacagatgacattaaaa
acttttcactttgctggagttgcaagcatgaatgttacacttggagtccctcgtatcaag
gagataataaatggagcaaaaaatattcataccccaatcattactacagtactcgagtgt
gataataatccaatgattgcacggatggtggcaggtcggattgaaaaaacaaatttaggg
caggttgctgagtgtatagagattgtaatgagtccaagagcagcatatgtagaagtcaag
cttgatatggcggtgatacaagatgcacacttgtcaatagatgccaatgttgtaaaacaa
tcaattttgggaactccaaggattaaactgaaacatgagcacattagggttccagataat
caaacagttgaagttcattctcacgagaaggatagaagaaaacttcattttcacctctac
tatttgaagagtatactccccaatgttatagtacggggtataaagacaatcgaacgtgtt
gtcatcgatgaagaaaaagttaaaagggacaaaaaagatattgatattaaatgtggagac
gaaaagaagtacaagttgtttgctgaaggcaagggtcttctagcagtaatgagcactaaa
ggagtagatggttgtaaaaccacaagtaatgatattattgaagtgcagcagacacttgga
attgaagctgcaagaacttgtatcattgaggagataaagtatactatgaaatcacacgga
atgaacatagatgatcgccatatgatgcttttagcggatgtaatgacgttcagaggttta
gttcttggaatcacaagattcggcgttcaacagatgggcaaaagtgtattgatgctggct
tcatttgagcgaacagatgatcatctatttaatgcttccgttcaggggacagttgacaaa
attgaaggagtaagtgaaagcataatcatgggtataccaatgccgataggcaccggaatg
ttcaaaattaaacaacgcctccctgagatgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (45)   

Download RDF
DBGET integrated database retrieval system