KEGG   Gilliamella apicola: GAPWK_1554
Entry
GAPWK_1554        CDS       T03066                                 
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
gap  Gilliamella apicola
Pathway
gap03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GAPWK_1554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gap03400]
    GAPWK_1554
Enzymes [BR:gap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GAPWK_1554
DNA repair and recombination proteins [BR:gap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      GAPWK_1554
SSDB
Motif
Pfam: TRCF UvrB_inter MFD_D3 DEAD Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C dATP-dGTP_PPHyd
Other DBs
NCBI-ProteinID: AHN26129
Position
1680306..1683764
AA seq 1152 aa
MSKTPNISTLIPKKSGEVKQIGQLIGSSLSQFCAQSIDAHDGLVVIITDDMQQTTRIHEE
LRQFSPHPAIFFPDWETLPYDSFSPHQDIVSERLSCLYHLGHLTKGALILPINTLMQKVC
PQSYLGGHVFIMKKGLQISRENLRLQLENAGYRSVSQVMEHGEYATRGALFDIYPMGSDK
PYRIDFFDDEIDSIRTFDVESQRTLDEIPEIQLLPAHEFPFDKTAIELFRSQWRERFPVR
LEPESIYQQVSKNILPTGIEYWQALFFNESLTPLFSYFSANTLIINTINIESNANKFWQD
INQRYDSRKVDPMRPLLEPVIIWSKTDEIFADFKKYPRLVLSHEIISESNKNVNLAYSNL
PDLAVAIQQKDPYLQFHQFIENFTGKIVFSVESEGRKEALQEILGRIRIHPITINQLDEI
HHVNERFCIILGASEQGFINQSDNFAFITENELLGRRIVRRKKENKQAINTDTLIRSLAE
LTPGKPVVHLEHGVGRYAGLTTLETGGIYAEYLILLYANDTKLYVPVSSLNLISRYSGGD
EENAPLNKLGTDAWSKARQKAAEKVRDVAAELLDIYAERESKPGFEFKQDREQYELFCEA
FPYQETEDQQNAIGAVIGDMCSPYAMDRLVCGDVGFGKTEVAIRAAFLSVINHKQTAVLV
PTTLLAEQHYENFCDRFANWPIRIESLSRFKTAKQQQAIIQALSEGKVDIVIGTHKLLQE
DVKWKDLGLLIVDEEHRFGVRQKERIKAMRANIDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAVKTFVREYDDLVIREAILREILRGGQIYYLHNDVSDIEKVSEKLAELVPEA
RIAIGHGQMHERDLERVMNDFHHQRFNLLVCTTIVETGIDIPNANTIIIERADKFGLAQL
HQLRGRVGRSYHQAYAYLLTPHPKLLSKDAKKRLEAIASLEDLGAGFALATHDLEIRGAG
ELLGSDQSGQIETIGFNLYIELLDDAVKSLKEGKEPTLESLLNNQQTEVELRLPTLIPDD
FIPDVNTRLSLYKRIASIEAIDELTDIQIEMRDRFGKLPDAVLFLLETTKIRYQANKLGI
TKIEFGEKGGFIEFGKNNKISVDYLIEMIQKSPKNYRLEGANRLKLLSSYLDRSDRIEYI
KNLLADFSNHQE
NT seq 3459 nt   +upstreamnt  +downstreamnt
atgtctaaaactcctaatatttcaacattaattcctaaaaaatcaggtgaagtcaaacaa
attgggcaattaatcggatcatctctatcccaattttgtgctcaatccattgatgcacac
gatggtttagtggtgattattacagatgatatgcaacaaacaacccgtattcatgaagaa
ctaagacaattttcacctcatcctgctatctttttccctgattgggaaacactgccttat
gatagtttttcaccgcatcaagatatagtctctgagcgtctatcttgtctttatcattta
ggacatttgactaagggtgctttgattttaccgattaataccttaatgcaaaaggtctgc
ccacaaagctatttgggcgggcatgtgtttatcatgaaaaaaggcctacaaattagccgc
gaaaacttacgtttacaacttgaaaatgcaggttatcgctctgtcagtcaagtgatggaa
catggcgaatatgcaactcgtggtgctctttttgatatttatcctatgggcagtgataaa
ccctatcgtatcgatttttttgatgacgaaatagatagcattcgtacatttgatgttgaa
tctcaacgcacacttgatgaaatacctgaaatacagttattgccagctcatgaatttcca
tttgataaaactgctatcgagctttttagaagccaatggcgtgaaagatttcctgtcaga
ttagagcccgagagtatttatcaacaagtcagtaaaaacattttaccaacaggtatagag
tattggcaggctctgttttttaatgagtcattaactccgctgttttcatatttttcagct
aacacactcattattaacaccatcaatattgagtctaacgccaataaattttggcaagat
attaaccaacgttatgatagtcgcaaggttgatcctatgcgaccattattagagccagta
atcatttggtcaaaaaccgacgaaatatttgccgatttcaaaaaatacccaagactggtc
ttatctcatgaaattatcagtgaatcaaataaaaatgttaatttggcttattcaaatttg
cctgaccttgcggttgcaattcaacagaaagatccttatttgcaattccatcaattcatc
gaaaatttcacaggtaaaattgtcttttcggtcgaatcagaaggtcgtaaagaagcgtta
caagaaattttaggacgaattcgtattcatccaataacgattaatcaacttgacgaaata
catcatgttaatgaacgcttttgtataattctaggtgctagtgagcaaggttttattaat
caatcggataattttgcttttattactgaaaatgaactattgggtcgccgaattgttcgt
cgcaaaaaagaaaataaacaagcaattaataccgacacactaattcgtagtttagctgaa
ttaacaccaggcaaacctgtggtacatttagagcatggagtgggacgatatgctggttta
accacacttgaaacaggtggcatttatgcagaatatttgatcttactttatgcgaatgat
actaagctatatgtgccagtatcatctttaaatttaatcagtcgttactcaggtggggat
gaagaaaacgctccactgaataaacttggcactgatgcatggagtaaagctagacaaaaa
gcggccgaaaaagtacgggatgtcgcagccgaattacttgatatttatgctgaacgagaa
agcaaaccaggttttgaatttaaacaagatcgagagcaatacgaactattttgcgaagct
tttccttatcaagaaacagaggatcaacaaaacgcaattggtgcggtaattggcgatatg
tgttcaccttatgcgatggatagattggtttgtggtgatgttggttttggtaaaactgaa
gtcgctattcgagcagcatttttatcggtaataaaccataaacaaaccgctgttttagtc
ccaacaaccttacttgccgaacaacattacgaaaacttttgtgatcgcttcgctaactgg
ccaatacgtattgaaagcttgtcacgattcaaaacagctaaacaacaacaagctattatt
caagctttgagtgaaggtaaagtagatattgtaattggtacacataaactattacaagaa
gacgtaaaatggaaagatttaggattattaattgtcgatgaagaacaccgttttggcgtt
cgccaaaaagaacgaatcaaagcgatgcgagccaatattgatatattaaccctaacggcc
acacctattccacgaacacttaatatggcaatgagcggtatgcgggacctctcaattatt
gctacaccaccagcacgacgtttagcggttaaaacctttgtacgcgaatatgacgatctg
gttattcgagaagcaattttacgtgaaatcttacgtggaggtcagatctattacttacat
aatgatgtttcagacattgaaaaagtaagtgaaaaacttgctgaactggttccagaagca
cgtattgctattggtcatggtcagatgcatgagcgtgacttggaacgagtcatgaatgat
tttcatcatcaacgctttaatttactggtatgtactacaattgtcgaaacggggattgat
attccgaacgctaatactatcattattgaacgagccgataaatttggtttagctcagtta
catcagttgcgaggtcgtgtaggtcgttcttatcatcaggcttatgcctacttattaacg
ccacatcctaaattactcagtaaagatgctaaaaagcgtctagaagcaattgcatcactt
gaagatttaggcgcaggttttgctttggcaacacatgatcttgaaattcgtggtgctggt
gaattattgggtagtgatcaaagtggtcaaattgaaaccattggctttaatctttatatt
gaattacttgatgacgcggttaaatcacttaaggaaggtaaagaacctacccttgaatcg
ctccttaataaccagcaaaccgaagttgaattacgtttgccgacattgattcctgatgat
tttattcctgatgttaatacccgattgtcattatataaacgtattgctagtattgaagca
attgacgaattaacagatatacaaatcgaaatgcgagatcggtttggtaagctacccgat
gccgtactatttttattagaaacaaccaaaatccgttatcaggcaaacaaattagggatc
actaaaattgaatttggtgaaaaaggtggttttattgaatttggtaagaacaataaaatt
tcagtcgactatttaattgaaatgattcaaaaatcaccaaaaaattatcgccttgaaggc
gcaaatcgattaaaattgttgagttcatatctggaccgaagtgatcgtattgaatatatt
aaaaatttgttggctgatttttcaaaccaccaagagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (43)   

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