KEGG   Gemmatimonas aurantiaca: GAU_2148
Entry
GAU_2148          CDS       T00878                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
gau  Gemmatimonas aurantiaca
Pathway
gau03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GAU_2148 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gau03400]
    GAU_2148 (mfd)
Enzymes [BR:gau01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GAU_2148 (mfd)
DNA repair and recombination proteins [BR:gau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      GAU_2148 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C UvrB_inter CarD_TRCF_RID ResIII RecG_dom3_C Glyco_tran_WecG AroM
Other DBs
NCBI-ProteinID: BAH39190
NITE: GAU_2148
UniProt: C1A9L3
Position
complement(2513263..2516577)
AA seq 1104 aa
MMGLPRLIDAIAGLPAFDRMLKALPGAGASLRVGGLAGSSDAVLVAGLARALPQRLVVVI
ADQLGDAERWLADLQALLDDVPVALYPPREGFGEVEPHAEVAGERVETLEKLGRSAVRIL
LTTSRAVLERTALPRALSGARLELRKGDQRRLSDLVTHLESIGFERVPMVEDVAQFSVRG
GIFDIYSFGMAEPVRLEFWGDDIIELRHFDLNTQRSTRDAELALILPVDGRVQMAEETDE
RVALPALWPSDSIVVMPAGSSVLPELVRTWDEAAHHIELALRRGEDYTHRDLLFVPPPEM
ASTLARFGTVRINPPPQKATSANSKDLQPVGPEPDVMFPVRHPETISRDLRVLRRLQRDG
LHTVILCDNAGQAERLDELLGEDGPVAAALAIGVLGGGFVVPHVVRVLTDHEIFRRERRL
RRTRRYSTGASLDTLGALKPGDYVVHLEHGIGIYRGIEKIFVRESTIESAVIEYEGGDRL
NVPLYRIDQIERYRSAHDVSDDAPAPRLHKLGGNKWKAQREKTRMAILEMTQELLELYAR
RKVTTRPPHGADGAWQRQLESSFLFEDTPDQRKATEDVKRDLEGERPMDRLLVGDVGYGK
TEIAIRAAFKAVQGGRQVAVLVPTTILAEQHARSFGDRLADFPVTVEVMSRFQTASQQAV
VVEKLKKKQVDIVIGTHRLLSPDVAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTL
TATPIPRTLHQSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISRELDRGGQVFF
VHNRIETIEAIADHLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVDILVSTLIVESG
LDVPNANTMFVNRADHLGLAQLYQLRGRVGRSHRRAYCFLLVPDRVDEDAERRLAVLEHH
TELGAGYRVALKDLELRGAGNLLGPEQSGFVHAVGFDLYLRLLDETVRLLADGGGQKPWI
PADVNLDFPAYLPDEYIISQEAKLDVYRRLTAMRDVAAIEALKREVRDRFGALPPAADAL
FGSAVLRVLGAMLSVDGVLVRASEARITFRADAVPRLKGLSAAFHEVQFQVDVRRTQPLA
LKLTRLGGAEMLEGLNRALRALVP
NT seq 3315 nt   +upstreamnt  +downstreamnt
gtgatgggactaccgcggttgatagatgcgatcgccgggctgccggcgttcgatcggatg
ctcaaggcgctgccgggagcgggggcgtcgttgcgggtcggcggattggccggttcgtcc
gatgccgtgttggtggccggtctggcgagagcgttgccgcagcgcctggtggtggtgatc
gccgatcagttgggagacgccgagcgttggctcgcggacctgcaggcactgctcgacgat
gtgccagtggcgctttacccgccgcgcgaaggcttcggggaagtggagcctcacgccgaa
gtggccggcgaacgggtggaaacgctcgagaagctcgggcgcagcgcggtgcgcattctg
ctgacgacttcgcgcgcggtgctcgaacgcacggcgctgccacgtgcattgagcggcgcc
cgtctcgagttgcgcaaaggtgaccagcgccgcctgtcggatctggtcacccatctcgag
tccatcggtttcgagcgggtgcccatggtggaggacgtggcccagttctccgtgcgtggt
ggcatcttcgacatctactcgttcggcatggccgaaccggtgcgcctcgagttctggggc
gatgacatcatcgagctgcggcacttcgatctgaacacgcagcgcagcacgcgagatgcc
gagctggcgctcatcctgccggtggatgggcgggtgcagatggccgaagaaaccgatgaa
cgcgtggcgctgccggcgctctggccgtccgattcgattgtcgtgatgcctgcaggcagc
agtgtcttgcccgagctggtgcggacctgggatgaggccgcgcaccatatcgagctcgcc
ctgcgacgtggcgaagactacacgcaccgcgatctcttgtttgtgccaccgccggagatg
gccagcaccctggcgcggttcggcacggtgcgcatcaatccgccgccccagaaggcgacg
agtgcgaacagcaaggatctgcagccggtggggccggagccggacgtcatgttcccggtg
cgccacccggaaaccatttcgcgcgatctgcgggtgctgcgccgcctgcagcgcgacggg
ttgcacacggtcatcctgtgtgacaacgccgggcaggccgagcggctcgacgaactgctg
ggagaagacggaccggtggcggctgcgttggccatcggcgtgttgggcggcgggtttgtg
gtgccgcacgtggtgcgcgtgctcaccgaccacgagatcttccgtcgtgagcggcgtttg
cgccgcacgcgccgctacagcacgggcgcgtcgctcgacacactcggtgcactcaagccc
ggtgactacgtcgtgcacctcgagcacggcatcggcatctatcgcggcatcgaaaagatc
ttcgtgcgcgagagcaccatcgagagcgcggtcatcgagtacgaaggtggcgatcggttg
aatgtgccactgtaccgcatcgatcagatcgagcgctatcgcagtgcgcacgatgtgagc
gacgatgcgcccgcgccacgtctgcacaaactgggtggcaacaaatggaaggcccagcgc
gagaagacgcgcatggccatcctggagatgacgcaggagctgctggagctctatgcgcgt
cgcaaggtcaccacacggccgccgcatggtgcggatggtgcctggcagcgtcagttggaa
agttcgttcctgttcgaagacacacccgatcagcgcaaggccaccgaggatgtgaagcgt
gacctcgagggtgagcgaccgatggatcgcctgctcgtgggtgatgtgggctacggcaag
acggaaatcgccatccgtgccgctttcaaggcggtgcagggaggacggcaggtggcggtg
ctcgtgcccaccaccattctcgcagaacagcacgcccgcagcttcggcgatcggttggcc
gacttccccgtcaccgtggaagtcatgagccggttccagacggccagccaacaggccgtg
gtggtggagaagctcaagaagaagcaggtggacatcgtcatcggcacgcaccgtctgctg
agtcccgacgtggcgtttggggatctcggactgatcatcgtcgacgaggaacaccgtttc
ggggtgaagcacaaggaacgactcaagcagctcaaactgagcaccgacgtgctcacgctc
accgccacgcccattccgcgcacgctgcatcagtcgctggctggcctgcgtgacctgacg
ctgatgcagacggcaccgcgcgatcgttcgccggtgctcaccttcgtcgagccgttcgat
gatgcgctcatcgaagaagccatctcgcgcgagctcgatcggggcgggcaggtgttcttc
gtgcacaatcgcatcgagaccatcgaagccattgccgatcacctgcgtcggatcgtgccg
cgcgcccgtgtggcggtgggccatgggcagatgaaggaacgcgaactggaaaaggtcatg
cgccagttcgtggagggtgaggtggacatcctggtgtccaccctcatcgtggagagtggg
ctcgacgtacccaacgccaacacgatgttcgtgaaccgggccgaccatctcgggctcgcg
cagctctaccagttgcgcggccgcgtggggcgttcccatcgccgggcctactgtttcctg
ctggtccctgatcgggtggacgaagacgccgagcgtcgcctggcggtactggagcaccac
acggagcttggcgccgggtatcgggtggcgctcaaggatctcgagttgcgtggtgccggc
aatctgctggggccggagcagtccggatttgtgcacgcggtgggcttcgacctgtacctg
cggctgctcgatgagacggtccgtctgctggccgacggcggtggtcagaagccctggatt
ccggccgacgtcaatctcgatttcccggcctatctgcccgacgagtacatcatctcgcag
gaggccaagctggacgtgtaccgccgcctgaccgcgatgcgggacgtggcggccatcgag
gccctcaagcgggaggtgcgggaccggttcggggcattgccccccgctgccgacgccctc
tttggcagtgccgtgctccgtgtgctcggcgccatgctgtccgtggacggggtgcttgtg
cgggcatccgaggcgcgtattactttcagggctgacgcagttccgcggctcaaggggctg
tcggcggctttccacgaggtccagttccaggtggatgtccgtcgcacccagccacttgcg
ctgaagctgactcgactcgggggtgccgaaatgctcgaagggctgaatcgtgctctgcgt
gccttggtcccctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (47)   

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