KEGG   Granulibacter bethesdensis NIH3.1: GbCGDNIH3_0701
Entry
GbCGDNIH3_0701    CDS       T03155                                 
Name
(GenBank) Ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
gbc  Granulibacter bethesdensis NIH3.1
Brite
KEGG Orthology (KO) [BR:gbc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gbc03016]
    GbCGDNIH3_0701
Enzymes [BR:gbc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     GbCGDNIH3_0701
Transfer RNA biogenesis [BR:gbc03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    GbCGDNIH3_0701
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: AHJ62488
Position
complement(794583..795233)
AA seq 216 aa
MITQFMADKTIHLHRHDLPPSLDIGPMIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQ
IVPERLGGKGADCPNLKRLLSNPACVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLV
RTFTDRHGLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGL
LIREDRLALAEACFAFLPARARLDYLGYDEPDIFSH
NT seq 651 nt   +upstreamnt  +downstreamnt
gtgatcacacagttcatggccgataaaaccattcatcttcatcggcacgaccttccccct
tcattggatatcggccccatgatcgccattgatactgaaacgatggggcttaatcatcac
cgggaccggctgtgcctgatccagatttccgccggagatggtcatgcccaccttgtgcag
atcgtgccggagcgattgggcggcaaaggtgccgattgccccaacctcaaacggttgctc
agcaaccctgcctgcgtaaaactgatgcattacgcacggttcgatgtcggcattttgcag
aacgcactaggcatcgcgatgtccaacgtcaaatgcaccaagatcgccgccaagctggtc
cgtacctttacagatcgccatggcctgaaagatctgtgccgcgatcttctgggggtagag
atcagcaagcagcagcagagctccgattggggcgcacctgaactgacgccagagcagatg
gcctatgccgcctccgatgttctgtatctgcatgcactatggaaccggctggaaggatta
ctgatccgggaggataggcttgctctggctgaagcatgttttgcctttctgcctgccaga
gcacgactggattatctgggttatgatgagccggatattttttcgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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