KEGG   Citrifermentans bemidjiense: Gbem_0494
Entry
Gbem_0494         CDS       T00749                                 
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
gbm  Citrifermentans bemidjiense
Pathway
gbm00470  D-Amino acid metabolism
gbm00550  Peptidoglycan biosynthesis
gbm01100  Metabolic pathways
gbm01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:gbm00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    Gbem_0494 (ddl)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    Gbem_0494 (ddl)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    Gbem_0494 (ddl)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:gbm01011]
    Gbem_0494 (ddl)
Enzymes [BR:gbm01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     Gbem_0494 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:gbm01011]
 Precursor biosynthesis
  Amino acid ligase
   Gbem_0494 (ddl)
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_4 CPSase_L_D2 ATP-grasp GARS_A ATPgrasp_ST
Other DBs
NCBI-ProteinID: ACH37523
UniProt: B5EBQ4
Position
596677..597594
AA seq 305 aa
MTVEELKKKKIAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQ
VELAFIALHGRFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPY
QVLRRGEELKLANPLPVVVKPSREGSSVGVGIVRDPSRMQAALDEAFRYDSEILIEGFID
GREVQVGILNGKALGAIEIIPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKA
HAALGCDCYSRVDFLVTETGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQA
ASLKI
NT seq 918 nt   +upstreamnt  +downstreamnt
atgacggtagaggagctgaaaaagaagaagatcgcggtgctgatgggtggactttccgcc
gagcgcgaagtgtccctcaacagcggcaaggcggtccttgcctccctggtcaagcagggt
ttccgggcggtggggatcgacgtcggtcgcgacctgccgcagcggctggccgaggagcag
gtggaattggccttcatcgcgctgcacggccgcttcggcgaggatggctcggtccaggga
ctcctggaactgatgggcatcccctataccggctccggggtacttgccagcgccctcgcc
atcgacaaaatagcttccaaggtcatcttcgcctccgccgggctgaagctcgctccctac
caggtgctgcgccggggcgaggagctcaagctagccaacccgcttccggtcgtggtgaag
ccttcccgcgaaggctcctccgtcggagtcggcatcgtgcgcgacccttcccggatgcag
gcggcgctcgacgaggcgttccgctacgactccgagatcctcatcgagggtttcatcgac
ggtcgcgaagtccaggtcggcatactgaacggcaaggcgctgggcgccatcgagatcatc
cccaagggggaattctacgactacgaggcgaagtacaccgacggcggcgcgcagcacatc
ctgccggcgcgcctccccgaggcggtctacgccgaggtgcttcgtcagggtgagaaggcg
cacgcggcgctggggtgcgactgctacagcagggtcgacttcctggtcaccgaaacgggc
gactgcttcctcttggaggtgaacaccctccccgggatgacggacttaagccttcttccc
gagatagcggggggagccggaatcgctttcggcgagttggtactgcgcatactgcaggcg
gcatcgctgaagatctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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