KEGG   Citrifermentans bemidjiense: Gbem_3713
Entry
Gbem_3713         CDS       T00749                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
gbm  Citrifermentans bemidjiense
Pathway
gbm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gbm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gbem_3713 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gbm03021]
    Gbem_3713 (rho)
   03019 Messenger RNA biogenesis [BR:gbm03019]
    Gbem_3713 (rho)
Transcription machinery [BR:gbm03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Gbem_3713 (rho)
Messenger RNA biogenesis [BR:gbm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Gbem_3713 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA ATPase_2 AAA_25 Spore_III_AA
Other DBs
NCBI-ProteinID: ACH40705
UniProt: B5EDS7
Position
complement(4237047..4238294)
AA seq 415 aa
MNLQELKEKKINDLTAIAKGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVAGQIRPPKEGERYFALLKVETVN
HESPEVARDKILFDNLTPLYPQEKLKLETTHDNMSTRVMELIAPIGKGQRGLIVAPPRTG
KTMLIQNIANSIAMNHPEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHIQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGA
ARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRKLVEKRTFPAIDINKS
GTRKEELLIDKASLNRIWILRKVLHPMNVVDSMEFLISKLQGTKSNQDFLDSMSK
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgaacctacaggaacttaaagaaaagaagatcaacgatctcactgcgattgccaagggg
ctcaacatcgagggggcttccagtctcaggaagcaggacctgatcttcgccattctcaat
gcccagactgagaagaacgggatgatcttcggcgagggcgttctggagacgctccctgac
ggttttggcttcctgagggcgccggactacaactacctgccggggccggacgacatctac
gtctcgccgtcgcagatccgccgctttaacctgcacaccggcgacacggtggcgggccag
atcaggcctcccaaggaaggggagcgctacttcgccctgttgaaggtcgagacggtgaac
cacgagtcccctgaggttgcgcgcgacaagatcctgttcgacaacctgactcctctctat
ccgcaggaaaagctgaagctcgagaccacccatgacaatatgtcgacccgggtcatggag
ctgatcgcgccgatcggcaaggggcagagggggctcatcgtggcgccgcccaggaccggc
aagaccatgctgatccagaacatcgccaactccatcgccatgaaccaccccgaggtgttc
ctgatcgtccttctgatcgacgaaaggcccgaggaggtgaccgacatgcagcgctcggtg
aagggcgaggtgatctcctccaccttcgacgagccggcctcgcgccacatccaggtggcc
gagatggtcatcgagaaggccaagcggctggtcgagcacaagcgcgacgtcgtcatcctg
ctcgactccatcacccgcctggcccgcgcctacaacaccgtgatcccgccttccggcaag
atcctctccggcggcgtcgactccaacgccctgcataagcccaagcgcttcttcggcgcg
gccaggaacatcgaggaagggggctccttaaccatcatcgccaccgcgctcgtcgacacc
ggctccaagatggacgaggtcatcttcgaagaattcaagggcaccggcaacatggagctc
cacctggaccgcaagctggtcgagaagaggaccttccccgccatcgacatcaacaaatcc
ggcaccaggaaggaagaactcctgatcgacaaggcgtccctgaaccggatctggatcctc
aggaaggtgctgcatcccatgaacgtggtcgactccatggagttcctgatctccaaattg
caggggaccaagagcaatcaggacttcctcgattcgatgagcaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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