KEGG   Geobacillus sp. C56-T3: GC56T3_0930
Entry
GC56T3_0930       CDS       T01245                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
gct  Geobacillus sp. C56-T3
Pathway
gct03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gct00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GC56T3_0930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gct03400]
    GC56T3_0930
Enzymes [BR:gct01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     GC56T3_0930
DNA repair and recombination proteins [BR:gct03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GC56T3_0930
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 UvrD-helicase AAA_16 Zeta_toxin AAA_22 UvrD_C T2SSE HTH_IclR AAA_28 NTP_transferase AAA AAA_12 NTPase_1 DEAD TsaE HHH_3 AAA_18 AAA_23 DUF4926 nSTAND3 AAA_29 KTI12
Other DBs
NCBI-ProteinID: ADI25972
Position
993513..995873
AA seq 786 aa
MQEQQILALDGRTFIKGVCLAVIFHNEETLYTVVRVRVEETNEAPVEEEVVVTGYFPRLN
EGDVYIFYGQFRQHPRFGRQYAASQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVET
LGENAIAAILRDPKTLERVPKLTKKKAKQLYDALRAHEGLEQTMIALAQLGFGPQLAMKI
YQAYGEEAIDIIHENPYQLVEDIEGIGFSRADEIGRQLGISGSHPARLRAASLFILEQAC
LQEGHVYLREEELMERIGELLDGRLSGAVDGRAISQTLLMLSEEGKLIAEQGRYYLPSLY
FAEKGIVSNIKRLLGQAPPSAFAESEFLLALGALEERLGMQYAPQQREAIQQALSSPLFI
LTGGPGTGKTTVIKGIVELFAALNGLSLDPADYKQGEPFPVLLAAPTGRAAKRMSEATGL
PAATIHRLLGWNGAEGFSRDENEPISGKLLVIDEMSMVDTWLANQLLKAVPNDMQVIFVG
DEDQLPSVGPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHKMKRGVVPDDLTAPK
ADRSFIRCRAGQVVDVVRQIADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNP
PAEGKRELSVGEVVYRVGDKVLQLVNQPEDNVFNGDIGEIVAIFYAKENIEKQDLLVVSF
DGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKNYYRMLKRNLLYTAVTRSKQ
FLVLCGEEEAFRFGVAKQSDGARQTALAEKLAGAAAPFVEVELPFEEANMGMENVTPYDF
MGDEPS
NT seq 2361 nt   +upstreamnt  +downstreamnt
ttgcaagagcaacaaatcctcgcccttgacggacgcacgttcattaaaggagtgtgcttg
gcggtcatttttcataatgaggaaacattgtacacggtcgtccgtgtgcgcgttgaggaa
acgaacgaagcgcccgttgaggaggaagtcgtcgtcaccggctattttccgcgtttaaac
gaaggggacgtctacatcttttacggacaattccgccaacatccgcgttttggccgccaa
tatgcggctagtcagttccgcaaacagcttccgaacacgaaagaaggagtcattcattat
ttatcgagcggtttgttcaaaggaatcggcaaaaaaacggctgcggcgattgtcgagacg
ctcggcgaaaacgcgattgcggccattttgcgcgaccccaagacgctagagcgtgtgccg
aagctgacgaaaaaaaaggcgaagcagctgtacgatgcgcttcgcgcccacgaagggctt
gagcaaacgatgatcgccctcgcccagctcggttttggcccgcagctggccatgaaaatt
taccaagcgtatggcgaagaagcgattgacatcatccacgagaacccgtaccagcttgtt
gaggatatcgaagggatcggctttagccgcgctgatgaaatcgggcgccagctcggcatt
tccggcagccatccggcccggctgcgcgccgcctcgttgtttattcttgaacaggcgtgc
ttgcaggaagggcacgtttatttgcgcgaggaagagttgatggagcgcatcggggagctg
cttgacggaaggctgagcggtgcggtggatggacgagcgatcagccaaacgcttctgatg
ttaagcgaggaaggaaagctgatcgccgagcaagggcgctattatctcccttccctttat
ttcgctgagaaagggatcgtctccaacattaagcggctgctcgggcaggcgccgccgtcg
gcgtttgccgagtcggagtttttgctggcgcttggggcgcttgaggaacggcttggcatg
caatatgccccccagcaaagggaagcgatccaacaagcgctttcttcgccgctgtttatt
ttgaccggcggtccgggaacggggaaaacgacggtcatcaaaggcatcgtcgagctgttt
gccgccctaaacggcctgtctcttgacccggctgactacaaacaaggcgagccgtttccg
gtgctgctggccgcaccgaccggccgagcggcgaagcggatgagcgaggcgaccgggctg
ccggcggcgacgatccaccgcttgctcggctggaatggggcggaagggttcagccgtgac
gagaacgaaccgatttccggcaagctgcttgtcatcgatgagatgtcgatggtcgacacg
tggctcgccaaccagctgttaaaagccgtgccaaacgacatgcaagtcattttcgtcggc
gatgaggatcaattgccatccgtcgggccagggcaagtgctgaaagacttgctctcttca
ggcgttattccgttcgctcggttgaccgaggtgtatcgccaggcggaaggatcatcgatc
atcgagcttgctcataagatgaagcgcggcgtcgtgccggacgatttgaccgctccgaag
gcagaccgttccttcatccgttgccgtgcgggccaggtcgtcgatgtcgtgcggcaaatc
gcggacaacgcgcgcaaaaaagggttttccgtcaaagatattcaagtgctcgccccgatg
taccgtggtccagcgggcattgaccaattgaacaaggcgcttcaagagctgttcaacccg
ccggctgaggggaagcgggagctgtcggtcggtgaggtcgtctaccgcgtcggcgataag
gtgctgcagctcgtcaatcaaccggaagacaatgtgtttaacggcgacatcggcgaaatc
gttgccattttttacgccaaagaaaatatcgaaaagcaagacttgctcgtcgtctcgttt
gatggcattgaagtgacgtacacacggcaagatttaggacaaatcacccatgcgtactgc
tgttcggttcataaggcgcaaggaagcgagtttccaatcgtcattttgcccgtcgtcaaa
aactattaccggatgttgaaacggaatttgttgtatactgcggtgacaagaagcaagcag
tttctcgttttatgcggggaagaggaagcgtttcgattcggcgtcgcaaaacaaagcgac
ggagcgcgccagacggcgctcgctgagaagctggcgggggcggcggcgccgtttgtcgag
gtcgaactgccgtttgaagaggcgaacatggggatggaaaacgttacgccgtatgacttt
atgggcgatgagccaagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (29)   
   Pfam (29)   
All databases (38)   

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