KEGG   Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI2815
Entry
GDI2815           CDS       T00631                                 
Symbol
recD
Name
(GenBank) putative exodeoxyribonuclease
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
gdi  Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GDI2815 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gdi03400]
    GDI2815 (recD)
Enzymes [BR:gdi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     GDI2815 (recD)
DNA repair and recombination proteins [BR:gdi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GDI2815 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 HHH_2 Helicase_RecD PIF1 nSTAND3 MeaB NTPase_1 AAA_16 RsgA_GTPase AAA_29 AAA_22 DEAD SLFN-g3_helicase T2SSE UvrD-helicase ABC_tran ATP_bind_1 AAA_28 AAA cobW IstB_IS21 ABC_ATPase TsaE MMR_HSR1 AAA_24 NACHT AAA_23 MobB NB-ARC TrwB_AAD_bind HHH
Other DBs
NCBI-ProteinID: CAP56758
RhizoBase: GDI2815
UniProt: A9HQK8
Position
complement(2896416..2898602)
AA seq 728 aa
MSGRAIDSSPTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFVQ
MSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAVF
DLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYGQ
DAVQLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMEEGHCG
LPVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGDTDCIFLAGLYRAERSIAER
LRACAVGRPPWPEIDAAKAMTWVEGKTGLALAPSQQEAVRLALRSKVLVITGGPGVGKTT
LVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPANGSFKRDDTNP
LTCDLLVVDEASMVDVLLMRSLLRALPDSAALLIVGDVDQLPSVGPGQVLADIIGSDAVP
VVRLTEVFRQAAQSRIITNAHRINEGKMPDLSAEEGSDFYFVEAAEPEAGLRKLLAVVKD
RIPARFGLDTVRDVQVLCPMNRGGLGARSLNIELQQALNPPGEVKVERFGWTYGPGDKVM
QIANDYDRDVFNGDLGVIDMIDVEEGELTVLFDGREVVYGFGELDELVLAYATTIHKSQG
SEYPAVVIPLVTQHYAMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRRRWSKLR
EWLAGSVA
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgagcggacgtgccatcgactcttcgcccacggaagcgctggcgggactggtcgagcgg
gtgacgttccataatgccgagaacggcttctgcgttctgcgggtgaaggtgcggggacag
cgcgatctggtcaccgtcgtcggccatgccgccatgatctcggcaggcgagttcgtgcag
atgtcggggcgctggttcaacgaccacacccacggcctccagttcaaggccgagttttta
aaggccagcccgccgaccacggtcgagggcatcgagcgctatctgggctcaggcatgatc
cggggcatcggtccggtctacgccaagaaactggtgaaagcgttcggcgaggcggtgttc
gacctgatcgaacaggaaccgcaccgcctgcgggaggtgacgggtatcggccccaagcgt
gccgaacggattgtcggtggctgggcggaccagaaggtgatccgcgagatcatgctgttc
ctgcacagcaatggtgtcggcacctcgcgggcggtgcggatcttcaagacctacggacag
gacgcggtccaactgatcagtgagaacccctaccggctggcgaaggacattcggggtatc
gggttcaagaccgctgaccagatcgcccggaagatggggatcgcgcccgacgccatgatc
cgggtacgggccgggatttcctatgcccttggcgaggcgatggaagaggggcattgcggt
ctgccggtcggggagctgctgaccagcaccgccgaactgctggaggtcgcggcacccctg
atcgagacggcgctcgcgctggaactggaagcaggggacgtggtcgccgacagcgtgggc
gatacggactgcattttcctggctggtctctatcgcgcggagcggagcattgcggagcga
ttgcgtgcctgtgccgtgggtcgaccgccctggcccgagatcgacgctgcaaaagccatg
acctgggtcgaaggcaagactgggcttgcgctcgcgcccagccagcaggaggcggtgcgc
cttgccctgcgcagcaaggtgctggtgatcacgggggggcccggtgtcggcaagaccacg
ctggtcaacgccatcctcaagatcgtgaccgccaagggcacggacgtgcagctttgtgcg
ccgacgggccgcgcggcgaagcgcctgtcggaaagcaccggactggaaggcaagaccatc
catcgactgctggagacggatccggcgaatggcagtttcaaacgggacgacaccaacccg
ctgacctgcgatctgctggtcgtggacgaggccagcatggtggacgtgctgctgatgcgc
tccctgctgcgcgcgttgcccgacagtgcggcgctgctgatcgtgggggacgtggaccag
ttgccgtcggtcggaccggggcaggtgctggcggatatcatcggttcagatgccgtgccg
gtggtgcggctgaccgaggtgttccgccaggcggcgcagagccggattatcaccaatgcg
caccggatcaacgaagggaagatgccggatctgagcgcggaagagggatcggatttctat
ttcgtggaggcggccgagcccgaggctgggctgcgcaagttgctggccgtggtgaaggac
cgcatcccggcgcggttcgggctggacacggttcgcgacgtgcaggtgctgtgcccgatg
aaccggggcggccttggggcgcgatcgctgaatatcgaattgcagcaggcgttgaatccg
ccgggcgaggtgaaggtcgagcggttcggctggacctatggtcccggcgataaggtgatg
cagatcgccaatgattatgaccgggacgtcttcaacggggatctcggcgttatcgacatg
atcgatgtggaagagggcgaactgacggtcttattcgatggacgggaagtcgtttatggc
tttggggaactggatgaactggtgctcgcctatgccaccacgatccacaagagccaggga
tccgaatatccggccgtggtgatcccgctggtgacccaacattacgccatgctggcgcgg
aacctgctctataccggcgtcacacggggacggaagctcgtcgtgctcgtgggccagaag
aaggcgctggcaatcgctgtgcgcaatcagggcgggcggcggcggtggtcgaagctcagg
gagtggctggccggtagcgttgcatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (38)   
   Pfam (38)   
All databases (54)   

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