KEGG T00933: GM21

Geobacter sp. M21: GM21_0221

Entry

GM21_0221         CDS       T00933

Name

(GenBank) 3'-5' exonuclease

K03684

ribonuclease D [EC:3.1.13.5]

Organism

gem Geobacter sp. M21

Brite

KEGG Orthology (KO) [BR:gem00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gem03016]
    GM21_0221
Enzymes [BR:gem01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     GM21_0221
Transfer RNA biogenesis [BR:gem03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    GM21_0221

SSDB

Motif

Pfam:

DNA_pol_A_exo1 HRDC

Other DBs

NCBI-ProteinID:

ACT16306

UniProt:

C6DY31

Position

265179..266312

AA seq 377 aa
MQKRNNVTNPAAAHLVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSAS
EDRLIDPLAPIDVKVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFL
GESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELK
QKGRLAWVEEESELVAGVRSPSREGELMCLRFKGASKMKPRELAVLEELLRFRDEKARLA
DVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRGLLQAIANGLAVPQDKL
PQVQSGRRPVLDRLQDERVKRLKVWREAKSAQLGLGIGLVANNTLLEALAEPGSQNTTLL
KRWQREAFGDELASLIS

NT seq 1134 nt +upstreamnt +downstreamnt
ttgcagaagagaaataatgtgacaaaccccgcagcggcacatctggtaaccgatcaaaag
actttagacgaactcgttgagcggctctccagggaatcggtccttgcctttgacttggag
gcggactccctccatcactatactgagaaggtgtgcctgatccaggtctcttccgcatcg
gaagatcgcctgatcgacccgctcgctcccatagacgtcaaggtgctggcgcccatcttc
gccaacccggcgatcaagaagatcttccacggcgcggactacgacatgcgctcgctctac
cgggacttcggcatcgaggtggtgaacctgttcgacaccatgatcgccagccagttcctg
ggagagagcgagttcggcctggcggcgctccttaagaagaggttcggggtcgagctggac
aagcgctaccaaaaggccgactggagcaagcgccccttctcccaggagatgctggattac
gccatgaaggacacttccctcctgatcgagctctaccgccagctggaggcggagctgaag
cagaaggggaggctcgcctgggtcgaggaggagtcggagttggtggcaggggtgcgttcc
ccttcccgcgagggggaactgatgtgcctgcgcttcaagggggccagcaagatgaagccg
cgcgagctcgccgtgctggaagagcttctgcgcttccgtgacgagaaggcgcgcctggcg
gatgtccctcccttcaggatcctcagcaacgacctgttgcgggagctggcagagaaacag
ccgaggaataacttcgagctggtcggcatccacaccatgtcctccaaactgatagaacgg
ctggggcgcgggctgctgcaggccatagcaaacgggctggcggtcccccaggacaagctc
ccgcaggtgcagtccgggcgccgaccggttctggaccggctgcaggacgaaagggtgaag
cgcctcaaggtctggcgcgaggcgaagtcggcgcagctgggtctcggtatcgggctcgtc
gccaacaacacgctcctggaggcgctggcggaaccgggctcccagaacacaactctcttg
aagcgctggcagcgcgaggcgttcggggacgagctggcctcgctcatctcctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

Download RDF

DBGET integrated database retrieval system