KEGG   Geobacter sp. M21: GM21_1787
Entry
GM21_1787         CDS       T00933                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gem  Geobacter sp. M21
Pathway
gem03410  Base excision repair
gem03430  Mismatch repair
gem03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    GM21_1787
   03430 Mismatch repair
    GM21_1787
   03440 Homologous recombination
    GM21_1787
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gem03400]
    GM21_1787
DNA repair and recombination proteins [BR:gem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     GM21_1787
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     GM21_1787
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GM21_1787
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Amelin
Other DBs
NCBI-ProteinID: ACT17841
UniProt: C6E6K0
Position
2077947..2079656
AA seq 569 aa
MQPITHKIWRPREADPAAVDALTRSGFPALLARLLANRGIDGEKGAKAYLSPVLSGLENP
MLMKGMAEAVERLALARTRHERVCVHGDYDVDGVTASALLIGFFRAVGIDCFPYIPKRLT
EGYGLSPQGVAAAAKGGATVLVTVDCGITSLDEGLLCREAGIDLIVTDHHAPGERLPEAL
AVIDPLQPGCPFPFKSLAGVGVAFHLLIALRARLRADNSFTACEPDLKEYLDLVALGTVA
DVVPLLGPNRILVSYGLKQLSAGSRVGIAALKEVAGVTGEVGCGAVGFRLAPRINAAGRL
EDAALGLELLLTGDPARAREIAALLDDSNGERQALERATLDEARAMLEQGACRGRKSIVL
GSDLWHPGVIGIVASRIVELFHRPVILFAFEGGTGRGSGRSISRFHLLDAIRTCGKHLLR
FGGHSHAAGLSIAEEELDSFSLSFEQAAQALDDDALTPTLAYDLELLPGAVDEALVTELE
RMKPFGMGNPEPLFLMKGVRVEDCRVLKGGHLKLKVVHGGRAFEAIAFGLADKGGAQRVD
LVCSPGINVWNGKRSLQLTVKDLREVHEC
NT seq 1710 nt   +upstreamnt  +downstreamnt
atgcaaccaatcacccataaaatctggcggccgcgcgaggccgatcccgccgccgtggac
gcgctcacccgctcgggtttccccgcacttttggcgcggcttctggccaaccgcggcatc
gacggggaaaagggagcgaaagcctacctgtcgccggtactttccggtctggaaaacccc
atgctgatgaagggtatggcagaggcggtggagaggctcgcgctcgcgcgcacacgccac
gaacgtgtctgcgtgcatggggattacgacgtggacggggtcacagcctcggcccttttg
atcggctttttccgcgccgtcggcatcgactgctttccctacataccaaagcgcctcacc
gaggggtacggcctttccccgcagggggtcgccgccgctgccaaggggggggcgacggtg
ctggtcacggtggactgcggcatcacctcgctcgacgagggcctcctttgccgcgaggcc
ggcatcgatctcatcgtcaccgaccaccacgcccccggcgagcgtctccccgaggccctc
gccgtgatcgacccgctgcagcccggctgccccttcccgttcaagtcgctcgccggcgtc
ggggtcgccttccaccttctgatcgcgctccgcgcgagactgcgcgcagacaacagtttc
actgcctgcgaacccgacctgaaggagtatctcgacctggtggcacttggcaccgtggcg
gacgtggtgccgctgttgggtccgaaccgcatcctggtgagctacgggctgaagcagctg
tcggccgggtcccgggtcggtatcgcggcgctcaaggaagtggcaggcgttaccggggag
gtcggctgcggcgccgtcggtttccggctcgcgccgcgcataaacgcggccgggcgcctg
gaggacgcggcgctcgggctggagctccttttgaccggcgaccccgcccgggcaagggag
atcgcggctcttctcgacgacagcaacggcgagcgtcaggcgctggagcgagccacactc
gacgaggcgcgcgccatgctggagcagggggcctgccgggggagaaagagcatcgtcctc
ggctccgatctctggcacccgggggtgatcggcatcgtcgcctcccgcatcgtcgaactg
ttccaccgcccggtgatcctcttcgccttcgagggggggaccggaagggggtcggggcgg
agcatctcccggttccaccttttggacgccatccgtacttgcggcaaacacctgctccgc
ttcggcgggcacagccacgcggcgggtctctccatagccgaggaagagctggactctttc
agcttgagcttcgagcaggcggcccaggcactcgacgacgacgccctcacccccaccctg
gcctacgacctggagctactcccgggtgcggtggacgaggcgctcgtcaccgagctggag
cggatgaagccgttcggcatgggaaaccccgagccgctctttctgatgaagggggtgcgc
gtcgaggattgccgggtcctgaagggggggcacctgaagctcaaggtggttcacggcggg
cgcgccttcgaggcgatcgccttcgggctcgccgacaaggggggggcgcagcgcgtcgac
ctggtctgctcccccgggatcaacgtctggaacggcaaaaggagcctccagttgaccgta
aaggatctgcgcgaggtgcatgagtgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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