KEGG   Geminocystis sp. NIES-3709: GM3709_1984
Entry
GM3709_1984       CDS       T04142                                 
Name
(GenBank) cytoplasmic axial filament protein CafA and Ribonuclease G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
gen  Geminocystis sp. NIES-3709
Pathway
gen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GM3709_1984
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gen03019]
    GM3709_1984
   03009 Ribosome biogenesis [BR:gen03009]
    GM3709_1984
Enzymes [BR:gen01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     GM3709_1984
Messenger RNA biogenesis [BR:gen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GM3709_1984
Ribosome biogenesis [BR:gen03009]
 Prokaryotic type
  rRNA processing factors
   GM3709_1984
SSDB
Motif
Pfam: RNase_E_G SAVED
Other DBs
NCBI-ProteinID: BAQ65219
UniProt: A0A0D6AS29
Position
complement(2243546..2245696)
AA seq 716 aa
MPKQIIIAEKHHIAAVFAEDQIQELVVATGNQQVGDIYLGTVENVISGIDAAFVNIGDAE
KNGFIHVTDLGPLRLRKTAGAITELLFPQQKVLVQVMKEPTGSKGPRLTGNISLPGRYLV
LMPYGKGVSLSRRIKNENERNRLRALAILLKPSGMGLLVRTEAESTSEEGIIEDLDLLKK
QWDKIQQESNYINAPALLNRDDDFIQRVLRDMYSDDVNRIVVDSEESVKRVKKQLTNWGA
GRHPEGVFINAHQENTLILDYFRVNAAIKEALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTHSATSRETVLWTNYEAAIEIARQLKLRNIGGVIVVDFIDMDSRRDKLKLLEHFDRVL
KTDKARPQIAQLSELGLVELTRKRQGKNIYELFGQPCSHCNGLGLVAHLPGHHEVDPLPS
NYYTPIIVNKTPDKPIIEEKIIFSDDYSNDGDDTELLDNGSYQDQVNGAVRRRRRRRETP
LKEEPMLLGNNNFTESEIKSDRSSIREPNTNSRDRKGHNVLPRHGNRDEAKLEKVVVEMT
ETEQEVYALMGVSPILRLGQEFKDPKSVVIYVKSPDDNSNNIDFDKSQDKENYSINNDEV
SEYPLLDAIADMVSQNIDEEDETIIYNNSAMYEYSEDKENEMTISLDSDMEEYEEVPSYS
IPDIVSQDTDSQFQNLIVEPQTITETLIKEALESDRPVVRTRRRRSSTSSIVMDNE
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgccaaaacaaataattattgcggaaaaacatcatattgcagcagtatttgctgaagat
caaattcaagaattagtggttgccactggcaatcaacaagtgggagatatttatttaggt
acagtagaaaacgtcatttcaggaatagatgcagcttttgttaatataggtgatgcggaa
aaaaatggttttattcatgtaacagatttaggccctttacgtcttagaaaaactgccgga
gcgattacggaattattatttcctcaacaaaaagtattagttcaagtaatgaaagaacct
acaggttctaaaggccctcgtttaacaggaaatataagtcttcccggacgttatctagtg
ttaatgccctatggcaaaggagttagtttatctcgtcgtatcaaaaatgagaatgaacgt
aaccgattacgcgctttagctattttactcaaaccttcaggaatgggtttgttagtacgt
acagaagcagaaagcacttcagaagaaggaattatcgaagatttagatttattgaagaaa
caatgggacaaaatacaacaagaatctaattatatcaatgctccagctttgctaaatcga
gatgatgatttcatacaaagagtattacgggatatgtactctgatgatgttaaccgcatt
gtagtagattcggaggagagcgtcaaacgggttaaaaaacagctaaccaattggggggca
ggtcgtcatccagaaggtgtttttattaatgctcatcaagaaaatacactgattttagac
tattttcgtgttaatgcggcgatcaaggaagcattaaagccaagggttgatttaccttca
gggggttatattattattgagccaacagaggcattaaccgtaattgatgttaactctggt
tcttttactcattcggctacttctagggagacagtattatggactaattatgaagcagcg
atcgagatagcccgtcaattgaagttgcgtaatattggcggtgtgattgtggtagatttc
attgatatggattctcgtcgagataaactaaaactattagaacatttcgatcgagtctta
aaaaccgacaaagctagacctcaaattgctcaattatctgagttaggattggtggaatta
acccgcaaacgtcaaggtaaaaatatttatgaattatttgggcaaccttgttctcattgt
aatggcttagggttagttgctcatttgccgggtcatcacgaagtggatccgttaccatct
aattattatacccctattattgtcaataaaactcctgataaaccaattattgaggagaaa
attatcttctctgatgattatagtaatgatggtgatgatacagaattattggataatggt
agttaccaagatcaggtaaatggagcagttcgtcgtcgtcgccgtcgtcgggaaactcct
ttaaaagaagaaccaatgttattgggcaataataattttacagagtcagaaattaaatct
gatcgtagttcgatcagagaaccaaataccaactcacgagatcgaaaaggacacaatgta
ttacctcgtcatggtaatcgtgatgaggcgaaattagaaaaagttgttgtcgaaatgacg
gaaacggaacaagaagtttatgctttaatgggagtctctccgatactccgtttaggtcag
gaatttaaagatcctaaatctgttgtaatttatgttaaatctcctgacgataattctaat
aatattgatttcgataaatctcaagataaagaaaattattcaataaataatgatgaagtt
tctgagtatcccttattagatgcgatcgctgatatggtatctcaaaatattgatgaggaa
gacgaaacaataatttataacaattccgcaatgtatgagtactcagaagataaagaaaat
gaaatgactatttccttagactcagatatggaagaatacgaagaagttccatcatattcg
atacctgatattgtatctcaagatactgatagtcaatttcaaaatctcattgtagaacca
caaactattacagagactctgattaaagaggctttggaaagcgatcgtcctgtggtgcgt
acccgtcgtcgtcgttcttcaacctcatctattgtcatggataatgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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