KEGG   Geminocystis sp. NIES-3709: GM3709_2438
Entry
GM3709_2438       CDS       T04142                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
gen  Geminocystis sp. NIES-3709
Pathway
gen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GM3709_2438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gen03019]
    GM3709_2438
   03400 DNA repair and recombination proteins [BR:gen03400]
    GM3709_2438
Enzymes [BR:gen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GM3709_2438
Messenger RNA biogenesis [BR:gen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GM3709_2438
DNA repair and recombination proteins [BR:gen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      GM3709_2438
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: BAQ65673
UniProt: A0A0D6AS22
Position
2767687..2769135
AA seq 482 aa
MMDKIQQLRNTLKHYWGYDNFRYPQEEIMMAILSGKDCLIVMPTGGGKSICFQLPALLQE
GLTIVISPLVALMENQVQELREKNLPAGILHSEVSKFDRKNTLFALKSEKLRLLYLSPET
LLSPSIWEIISIREIKINSLILDEAHCLAQWGESFRPAYRRLGTIRSCLLNYKPSSTKIP
IASFTATADINTQKTIIESLQLINPQKFLISPYRDNLKIEVKTIWTPKGRKQELIKYIQR
KKKESGLIYVRTRKDSEELAHLLNEAGYPNQPYHGGLGSNIRRKIESDWLKETIKFVVCT
CAFGMGINKSNLRWIFHYQAPLLLSEYIQEIGRGGRDGKLTEAVTLISEASGWLNPEDKQ
RREYFLNQQIKLYQQAEEFLKQIPIKGNIEELSRKFNNPNYQLYLSILNSSEQLQWIDTS
QYQLTPKKTHQSIQSLINQQKKLTYQTHQYLITKTCRWHFLLSAFGFSPSTNFRCGRCDN
CK
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgatggataaaatacaacaactaagaaatactcttaaacactattggggttacgataat
tttcgataccctcaagaagaaatcatgatggctattttgtcaggaaaagattgtttaatt
gttatgccaacaggaggaggcaagtcaatttgttttcagttacctgctttattacaagag
ggtttaactatagttatttctcctttagtggctttgatggaaaatcaagtacaagagttg
cgagaaaaaaatttacccgcaggtattttacatagtgaggtgagtaagttcgatcgaaaa
aatactctttttgccttaaaatcagaaaaattaagattactttatctgtctccagaaact
ttactttcaccatctatctgggaaataattagcattcgggaaattaaaattaatagttta
atcttagatgaagctcactgtttagcacaatggggggagtcttttcgtccagcttatcga
cgtttaggcacgattcgttcatgcttacttaattataaaccatcaagtaccaaaatcccg
atcgcatcttttactgccactgccgatataaatactcaaaaaactatcattgaatcctta
cagttaatcaatcctcaaaaatttttgattagtccttaccgtgataacttaaagatagag
gtaaaaacaatttggacaccaaaaggaagaaaacaagagttaattaaatatatccaaaga
aaaaagaaagaaagtggcttaatttatgtacgcaccagaaaagatagcgaagaattagct
catttattaaatgaagcgggttatccaaatcaaccctatcacggaggattaggtagcaac
atccgcagaaaaatagaatctgattggctaaaggaaacaataaaatttgtagtttgtact
tgtgcctttggtatgggaataaataaaagcaatcttagatggatttttcattaccaagct
ccattattgttgtcggagtatattcaagaaataggaaggggtggcagagacggaaaacta
acggaagcagttactctgattagcgaagcaagtggttggttaaatcccgaagataagcaa
aggagagagtattttttaaaccaacaaattaaactttatcaacaagcagaagaattttta
aagcaaatacccataaaaggaaatattgaagaattatcgagaaaatttaacaatcctaac
tatcaactatatttatctattcttaatagtagtgaacaattgcagtggattgatacttct
caatatcagttaaccccaaaaaaaacccatcagtcaatacaatctcttattaatcaacaa
aaaaaattaacttaccaaactcatcaatacctaattacgaaaacctgccgatggcatttc
ttgttatcagcttttggcttttctccttcgacaaattttcgttgtggtagatgcgataac
tgtaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (38)   

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