KEGG   Gallus gallus (chicken): 395803
Entry
395803            CDS       T01006                                 
Symbol
SFPQ
Name
(RefSeq) splicing factor, proline- and glutamine-rich isoform X1
  KO
K13219  splicing factor, proline- and glutamine-rich
Organism
gga  Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:gga00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:gga01009]
    395803 (SFPQ)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gga03021]
    395803 (SFPQ)
   03041 Spliceosome [BR:gga03041]
    395803 (SFPQ)
Protein phosphatases and associated proteins [BR:gga01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     395803 (SFPQ)
Transcription machinery [BR:gga03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     395803 (SFPQ)
Spliceosome [BR:gga03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    395803 (SFPQ)
SSDB
Motif
Pfam: RRM_1 NOPS RRM_7
Other DBs
NCBI-GeneID: 395803
NCBI-ProteinID: XP_015153296
CGNC: 49487
Ensembl: ENSGALG00000002514
UniProt: A0A1D5P8I3
Position
23:4539362..4553983
AA seq 647 aa
MSRDRFRSRGGGGGGFHRRGGGGGRGGPNHDFRSPPPGMGMGQNRGPMGGGPQGPGGPPG
GGPKSEPPKPPASTSAPPSSSSSSSATTAGPAGSQSGPGAPPPSALPAGQPPQQQAQGSA
PSSAPSGPGGQQQPQPKPSPSPTPAGGPKKGQGQSPGGGPKGPGGPQQGPGGPHKGGPGH
RGGPGGESRGRGQQHQGQQSLSSQQGPAGGDKLSDEGFKANLSLLRRPGEKTYTQRCRLF
VGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGR
QLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDRGRSTGKGIVEFAS
KPAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRF
AQPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAKDKLESEMEDAYHEHQANLLRQDLM
RRQEELRRMEELHNQEMQKRKEIQLRQEEERRRREEEMMIRQREMEEQMRRQREENYSRM
GYMDPRERDMRMGGATTMNMGDPYASAAQKFPPLGGGGGIGYEANPGVGQAAMSGSMMGS
DMRPERFGQGGAGPVGGQGPRGMGPGTPTGYGRGREEYEGPNKKPRF
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgtcgcgggatcggttccgtagccgtggaggcggcggagggggcttccatcggcgcggc
ggcggcggtggccgcggcggccccaaccacgatttccgttctccgccgcccggcatgggc
atgggccagaaccgcgggcctatggggggcggcccgcagggccccggcggccctccagga
ggaggcccgaagtccgaaccgccgaagcctccagcgtcgacctccgctccgccgtcctcg
tcctcttcatcctccgccaccacagcaggccccgccggcagccagtccggccccggggcg
cctcctccgtccgccctgcccgcggggcagccgccgcagcagcaggcccagggctccgcg
ccctcctccgctccctccggccccggggggcagcagcagccgcagcccaagccgagcccc
agccccaccccggccggcggccctaagaaaggacaaggacagtctcccggcggcgggccc
aaggggccgggcgggccgcagcaggggccgggcgggcctcacaaaggcgggccgggccac
cgcggcgggccgggcggggagtcgcggggccgcgggcagcagcaccagggacagcagagc
ctctcttcgcagcagggcccggccggcggcgacaagctttcggacgagggctttaaggca
aacctctcactgttgaggaggcccggggagaagacttacactcagcggtgccgtttgttt
gttgggaatttgcctgccgatataacggatgaagactttaaaagattgtttgccaaatac
ggggagccgggagaggtttttatcaacaaaggaaaaggctttggattcattaagttggag
tccagagctctggcagaaatcgcaaaggcagaactggacgacacccccatgcggggccga
cagctccgtgttcggtttgcaacgcacgctgccgcgctgtcagtgcgtaacctttcgcct
tacgtgtccaacgagttactggaggaggctttctcccagttcggtccggtggagagagct
gttgtgattgtagatgatcgaggtagatcaacaggaaaaggcattgttgaatttgcatca
aagccagctgccagaaaagcgtttgaacgatgtactgagggagtgttcttgttgacaacc
actcctaggccagttattgtggaacctttggagcaactggatgatgaagatggtcttcca
gaaaagcttgctcagaagaacccgatgtatcaaaaggaaagagaaactcctccccgtttt
gctcagcctggcagttttgagtttgagtattcccagagatggaaatctttagatgaaatg
gaaaaacaacagagagaacaagtggcaaaaaacatgaaagatgccaaggacaaacttgag
agtgagatggaagatgcttatcatgagcatcaggcaaaccttttgcgtcaagaccttatg
aggcgtcaggaggaactgagacgtatggaagaactccataatcaagaaatgcagaaacgc
aaggaaattcagctcaggcaggaggaggagcgtcgcagacgggaggaggaaatgatgatc
cgtcagcgagaaatggaagaacagatgagaaggcagagggaagagaattatagtagaatg
ggttatatggatcccagggagagagacatgagaatgggtggtgccaccacaatgaacatg
ggagatccttatgcttctgcagcccagaaatttccacctcttgggggtggaggcggcata
ggttatgaagctaatccaggagttggccaagcagccatgagtggttctatgatgggaagt
gacatgcgtcctgaacgctttgggcagggaggtgcggggcctgtgggtggccagggtcct
agaggaatggggcctggaacaccaacaggatatggtagagggagagaagaatacgaaggc
ccaaacaaaaagccccgattttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (88)   
   KEGG ORTHOLOGY (1)   
   RefGene (82)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (18)   
   RefSeq(nuc) (8)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (119)   

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