KEGG   Gallus gallus (chicken): 416329
Entry
416329            CDS       T01006                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03440  Homologous recombination
gga03450  Non-homologous end-joining
gga04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    416329 (RAD50)
   03450 Non-homologous end-joining
    416329 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    416329 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gga03032]
    416329 (RAD50)
   03400 DNA repair and recombination proteins [BR:gga03400]
    416329 (RAD50)
DNA replication proteins [BR:gga03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    416329 (RAD50)
DNA repair and recombination proteins [BR:gga03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     416329 (RAD50)
    BRCA1-C complex
     416329 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     416329 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook SMC_N AAA_21 SbcC_Walker_B DUF2703 AAA_29 ABC_tran AAA_13
Other DBs
NCBI-GeneID: 416329
NCBI-ProteinID: XP_004945072
CGNC: 5128
Ensembl: ENSGALG00000006794
Position
13:17625282..17643429
AA seq 1313 aa
MAKIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNSFVHDPKVANETDVRAQIRLQFRDVSGELIAVQRSMVCTQKSKKTEFKTLEGVITR
TNRHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEI
FSATRYIKALETLRQVRLKQGTKVKECQTELKYLKQNKEKAQEIQDNLANREAQLSASKE
NIKSIESQLDPLKSSLAAVEKNLMEVMSLDNNVKALESRRIQMEKDNQDLQRKMEKVFQG
TDEQLKDRYHNHQRTVKEKEKRLSDCKRELDRASKECQRFNSEKSELLIERGRLQLQADR
HQEHIKVRDSLIQALSAQLELDGFEQAPFNDRQIAVFHELLKERQKSDTEAANQLMREFT
QKEAMKQEQIDKIRDRKTGLERSIDLKSDIQNKRLAELKNVKYELCQLEGSSDRIAELDR
EIVKMEHELEKAERNSNVETLEQEVQTLQNEKINLDKVLRRLDQEMEQLNLHTTTITQME
MLKKDKADKEEQIRKVKLRHSEELTLLLGYFPNKKQLEDWLHGKSTEINETRSRHALLNK
QLASAEQQKNYISAELRKKEEQLSNYEAKLFDVCGSQDFDSNLNKLQDEIEKSSKQRAVL
AGATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESEL
KKREKKRDEMIGLKPIRQTVVELQERDIPDLRNRLQTVNRDFARLKGEIEEQETLLQTVL
SEKEGANACLQDITLMERYQTDIRDVERKIAQQEAKLLGVDLNRTVLQVSQEKQAKKHLW
DTVTSKIELNQKMKQDQQNQIQELKSTVNELRAEKLQISSSVQRRQQLEEQTVELTTEVQ
SLSREIKEEKEQVFPLDATLEKLQQDKEDLINKRTASNKEIQEKMNAIKEKVKDINKYTK
EIENYIQQGKEEYKKQKECELDEVNSQLVACEKQKEKISKEMEIIRQDIDTQKIQERWLE
DNLTLRERNKELKGVEDNIKELVKKMGEMKVPQLKNEQKHLEEKIEALKRNHHVALGRQR
GFEEEIVRFKKELRESQFKDAEEKHREMMIVMRTTELVNKDLDIYYKALDKAIMTFHSMK
MQEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLVITHDEDFVELLGRSEYVETFYRIRKNIDQCSEIMKCSVSSLGSYVH
NT seq 3942 nt   +upstreamnt  +downstreamnt
atggccaagattgagaaaatgagcatcctgggagtgaggagtttcggtgtggaggacaaa
gacaaacagattatcaccttctttaatcccctgaccattctggtgggacccaacggcgca
gggaaaacgaccatcattgagtgccttaaatacatctccactggagatttccctcctggc
accaaaggaaactcgtttgttcatgacccaaaggttgctaatgaaacagatgtgagagct
cagattcgattacagtttcgagatgttagtggagagctcatagctgtgcaacgatccatg
gtttgtacccagaaaagcaagaaaacagaatttaaaacgcttgaaggggtcattaccaga
acaaacaggcatggtgagaaggtcagtctcagttccaagtgtgcagaaattgatcgagag
atgatcagtgcccttggtgtttccaagtcagtgcttaacaatgtcattttctgccatcaa
gaggaatccaactggccgttaagcgaagggaaggccctgaaacaaaaatttgatgagatc
ttctcagcaacaaggtatattaaagcactggaaactctccgtcaagtacggctgaaacaa
ggcacgaaagtgaaagagtgtcagacagaactgaaatacctgaaacagaataaagaaaaa
gcccaggaaatccaggacaatcttgccaacagagaagctcaactgtctgcttctaaggag
aatataaaatctatcgagagtcagctcgaccccttaaagagttctctggcagcagttgag
aagaatctcatggaagttatgtcgctggacaataacgtgaaagccctggagagcaggagg
atacagatggagaaggataatcaagatctgcaacggaaaatggaaaaggtttttcaagga
acagatgagcagctcaaggatagataccacaaccaccagagaacagtgaaggaaaaggag
aagaggttgtcagactgtaagcgggaattagatagagcctctaaagaatgccagaggttt
aacagtgagaagtcagaactacttattgaacgaggtcgtctacagctgcaagcagatcgt
caccaagagcacatcaaagtgagggattccttaatccaggctttgtcagcacagctggaa
ttggatggctttgagcaagcaccttttaatgacagacagattgctgtttttcacgagtta
ttgaaagagaggcagaagagtgacacagaagctgcaaatcagttaatgagagagttcacg
cagaaagaagcaatgaagcaagaacagatcgataaaataagagataggaaaactggatta
gagagaagcattgacctgaaatcagacattcaaaataagaggctggctgaactgaagaac
gtgaaatatgaactgtgtcagttggagggctcttcagacagaatagcagagttggatcgg
gagatcgtaaagatggagcatgaactggagaaagctgagagaaacagcaacgtggaaact
ctggaacaggaagtgcaaacgctgcagaacgagaagatcaacctggacaaagttcttcgg
aggttggatcaggagatggagcagctgaatctacataccacaactattacccagatggag
atgctgaagaaagacaaagcagacaaagaggagcagattagaaaagtaaaattgagacat
tctgaagagctgacactactgctgggatattttcctaacaaaaaacaacttgaagactgg
cttcatggcaaaagcactgagattaacgagacaaggagtagacatgccctgctaaacaaa
cagctggcatcagcagaacaacagaaaaattatatcagtgctgaactaagaaaaaaagaa
gaacagttgtccaactatgaagcaaagctttttgatgtttgtggaagccaagattttgac
agtaacctgaacaaactgcaagatgagattgaaaagagttcaaagcagcgagctgtgctt
gctggagccactgcagtttattcacagttcattacacagctgacagaggagaaccagtca
tgttgtccagtttgccaaagagtttttcaaacagaggctgaactgcaagatgtgatcagt
gatctgcagtcaaagctgcgtctcgccccagacaaactgaagtcaacagagtctgaactt
aaaaaaagagagaaaaaacgtgatgagatgataggtcttaaaccaattaggcaaactgta
gtggagctccaagaaagggacataccggacttgaggaacaggctgcagactgtgaacagg
gattttgcacgcctgaagggtgagatagaagaacaggaaacacttttgcaaacagttcta
tctgaaaaggaaggtgctaatgcatgtttacaggacataactctcatggaaaggtaccag
actgatattagggatgttgaaagaaaaattgctcagcaggaggctaagttgctaggggtc
gatttaaatagaactgttctacaagtaagccaagagaaacaagcgaaaaaacatctgtgg
gataccgttactagtaaaattgagctaaatcagaaaatgaagcaagaccagcaaaatcaa
attcaggagctgaagagtacagtgaatgaactcagagcagagaaacttcagatttccagc
agcgtgcagcgtcgtcagcaactggaggaacaaacagtggaattaaccactgaggttcag
tccttgtccagggagatcaaggaagaaaaagaacaggtatttcctctggatgcaacttta
gaaaaactgcagcaagacaaggaggatctaattaataaaaggactgcaagtaataaagaa
atacaagagaagatgaatgccataaaagagaaagttaaagatataaataagtacacgaaa
gaaattgaaaactatattcaacaaggaaaggaagaatataagaagcaaaaggagtgtgaa
cttgatgaagtaaattcccagttagttgcctgcgagaaacagaaggaaaagatcagtaaa
gagatggaaattattcgacaggatattgacactcaaaaaatccaggagagatggctggag
gataatcttactttgagggagcggaataaagagctaaaaggagtcgaagacaatataaaa
gaacttgtaaagaagatgggagaaatgaaagtcccacagctgaaaaatgaacaaaaacat
ttagaggagaaaatagaagctctgaaaagaaaccatcacgttgcactgggccgacagcgt
ggatttgaggaagagatagttcggtttaaaaaggagcttcgagagtcacagttcaaggat
gcagaggaaaagcacagggagatgatgattgtcatgagaacaacagagctggtgaacaaa
gatttggacatttattacaaggccctggataaagcaataatgacatttcatagcatgaag
atgcaagaaattaacaaaataatccgcgacctttggcgaagtacctacagaggacaagat
attgaatatatagaaattcgttctgatgcagacgaaaacgtttcagcatctgataaaaga
agaagttacaattacagagtagtgatgataaagggagatacggcgctggatatgcgagga
agatgcagtgctgggcaaaaggtacttgcttctcttatcatccgtctcgctctggcagaa
acattctgcctcaattgtggcatattggcactggatgagcctaccaccaatcttgatcga
gaaaatatagagtctcttgcacatgcccttgtggagataataaagagccgctcacgacag
cgaaactttcagctcctggtgataactcatgatgaagactttgtggaactccttggtcgt
tctgagtacgtggaaaccttctacaggatcaggaagaacattgatcagtgctccgagatc
atgaagtgcagcgtcagctcccttggctcatacgttcattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (63)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (12)   
   RefSeq(nuc) (6)   
   GenBank (3)   
   EMBL (3)   
Protein domain (9)   
   Pfam (9)   
All databases (97)   

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