KEGG   Gallus gallus (chicken): 420725
Entry
420725            CDS       T01006                                 
Symbol
PDCD6IP
Name
(RefSeq) programmed cell death 6-interacting protein
  KO
K12200  programmed cell death 6-interacting protein
Organism
gga  Gallus gallus (chicken)
Pathway
gga03250  Viral life cycle - HIV-1
gga04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    420725 (PDCD6IP)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    420725 (PDCD6IP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:gga04131]
    420725 (PDCD6IP)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gga04147]
    420725 (PDCD6IP)
Membrane trafficking [BR:gga04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT associated proteins
    420725 (PDCD6IP)
Exosome [BR:gga04147]
 Exosomal proteins
  Proteins found in most exosomes
   420725 (PDCD6IP)
SSDB
Motif
Pfam: BRO1 ALIX_LYPXL_bnd
Other DBs
NCBI-GeneID: 420725
NCBI-ProteinID: NP_001026164
CGNC: 9128
Ensembl: ENSGALG00000033500
UniProt: Q5ZJ70
Position
2:44772822..44805675
AA seq 882 aa
MTNFISVQLKKASEVDLAKPLCKFIQQSYPSGDAQAEHCRAAEELSKLRKSALGRPLDKH
ESALETLLRYYDQLCSIEPKFPFSENQVCVTFTWKDAFDKGSLFGGSVKLALASLGYEKT
CVLFNCGALASQIAAEQNLDNDEGLKAAAKHYQFASGAFQHIKDTVLSALSREPTVDISP
DTVGTLSLIMLAQAQEVFFLKATRDKMKDGIIAKLANQAADYYGDAYKQCQYKDTLPKYF
YFQEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIGRLQHAADLVKTVASRYDEYIN
VKDLVDKINRALTAAKKDNDFIYHDRVPDLKDLEPIGKASLVKSTPVAVPLSQKFTDLFE
KMVPLQVQQSVSVYNQRKADLVNRLIAQMREATNLANGVLASLNLPAAIEDVSGDTVPQS
ILNKSKAVIEQGGVQTIDQLIKDLPELLQRNKEILDESLRLLDEEETTDNELRTKFKERW
QRTPSNDLYKPLRAEGANFHNILNKAVQADGQVREGYQSHRDTIALLCKPEAELNAAIPS
ANPAKTLQGSEVVNVLKTLLASLDEVKKEREQLENDLKSVNFDMTNKFLTALAQDGAINE
EAISVTELDRIYGSYTQKVQESLKKQEELLKNIQNAHQDFSKMKQSNNESNLREEVLKNL
AVANDNFVELLANLKEGTKFYNELTEILLKFQNKCSDIVFARKTERDELLKDLQQSIARE
PSAPSIPLPTYQTTPAGGSKPAASSTPTPAPRTMVGTKPQPPARPPPPVISAASSSPSAS
APSGTAAAPPSAPTPAAPTPAPGASASSTAPSQAQGPPYPTYPGYPGYCQMPMPIGYNPY
MYGQYNLPYAPSPVFQNPGQPPYPAPQQPGYPFPQQPYFPQQ
NT seq 2649 nt   +upstreamnt  +downstreamnt
atgacgaacttcatctcggtgcagctgaagaaggcctcggaggtggacctggccaagccg
ctctgcaagttcattcagcagagctaccccagtggcgacgcccaggccgagcactgccgc
gccgccgaggagctcagcaagctgcgcaagagcgcgttgggccgcccgctcgacaagcac
gagagcgcgctcgagaccctcctcagatattatgatcaactgtgttcgattgaaccaaaa
tttccattctctgaaaatcaggtctgtgtaacgtttacatggaaagatgcttttgataaa
ggatcgctttttggaggctctgtcaaactggctctggcaagtttggggtatgagaagacc
tgtgttttgttcaactgtggagcattggcaagccagattgcagcagaacaaaatctagat
aatgatgaagggctaaaagctgcagctaaacactaccagtttgcaagtggtgctttccaa
cacattaaagacaccgtcctgtcagctctgagccgagaacctacagtggacatctctcca
gacacagttggaactctcagtctcattatgctggctcaagcacaagaagtgttttttttg
aaagcaaccagagataaaatgaaagatggcatcatagctaagctagctaatcaagctgca
gattattatggtgatgcttacaaacagtgtcaatataaagatactctgcccaagtatttt
tatttccaggaggtgtttcccgttctggctgcaaagcactgcattatgcaggccaatgca
gaatatcatcaatctatcctggcaaaacagcagaagaaatttggtgaagaaattgggagg
ttgcagcatgcagcagacttggtgaaaacagtggcatctcgttatgatgaatatataaat
gttaaagatttggttgacaaaatcaaccgtgcgcttacagctgccaaaaaagataatgac
ttcatttatcatgaccgtgttcctgacctgaaagatttggagcccattgggaaagccagc
cttgtcaagtctactccagttgctgtgcccctcagtcagaaattcactgacctgtttgag
aagatggttcccttgcaagttcagcaatctgtgagtgtttataaccagagaaaggcagac
ctagtaaacaggttaatcgcccagatgagagaagccacaaatttggcaaatggagtgttg
gcttccctcaatcttccggctgctatagaagatgtgtctggtgatactgttcctcagtct
attttgaacaagtctaaggctgtgattgaacaaggaggagttcagactattgatcagctg
atcaaagatctacctgaactgctacaaaggaacaaagaaatcttagatgaatcactgcgg
ttattagatgaggaagaaactacggacaatgaactccgaacaaaattcaaagaacgttgg
cagcgaacaccatccaatgatctctataaacctttaagggcagagggagccaacttccat
aatatcttgaataaagctgtgcaagcagatggacaagttagagaaggctatcagtctcac
cgagataccattgcacttctgtgtaagccagaagcagaactcaatgcagccattccttct
gccaacccagcaaaaacattacaagggagcgaggtcgttaatgtattaaaaactttgctg
gctagtctggatgaagtcaaaaaggagagagaacaactggaaaatgacctaaaatctgtg
aattttgacatgacaaataaattcctgactgcacttgcacaggatggtgctataaatgag
gaggctatctctgtgacagagttggacagaatttatggaagttacacacagaaagtgcag
gaatccctgaaaaagcaagaagaacttctcaaaaacattcagaatgcacatcaggacttc
tcaaagatgaaacaatcaaacaatgaatctaatttgagagaagaagttttgaagaactta
gctgtagcaaatgacaacttcgtggaactcctagccaatttaaaagaaggcacaaagttt
tacaatgagctgacagaaatccttctgaagttccaaaacaaatgcagtgacattgtcttt
gctcgcaagactgaaagagatgaactgctcaaagatttgcaacaaagcattgctcgggag
cccagtgcaccctctattcctctgcctacttatcagaccacgccagctggaggaagtaag
cctgctgcttcatcgactcccactccagcacccagaaccatggtgggtactaaaccacag
ccaccagcacggccaccaccaccagtgatttctgcagcaagcagttccccttctgcatca
gcaccctctggaacagctgcagcacctccttctgctcctactcctgctgctcctactcca
gctccaggagccagtgcatcaagcactgcgccttcacaggcacagggacctccttaccca
acttatccaggttacccagggtattgccaaatgccaatgccaataggctataatccatac
atgtatggccagtataatctgccgtatgccccatcacctgtatttcagaaccctggacaa
ccaccatatccagcacctcagcaacctggatacccttttcctcaacagccttatttccca
cagcaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (17)   
   RefSeq(nuc) (7)   
   GenBank (5)   
   EMBL (5)   
Protein domain (2)   
   Pfam (2)   
All databases (75)   

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