KEGG   Gallus gallus (chicken): 421517
Entry
421517            CDS       T01006                                 
Symbol
TARBP1
Name
(RefSeq) LOW QUALITY PROTEIN: probable methyltransferase TARBP1
  KO
K15333  tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34]
Organism
gga  Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:gga00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gga03016]
    421517 (TARBP1)
   03036 Chromosome and associated proteins [BR:gga03036]
    421517 (TARBP1)
Enzymes [BR:gga01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.34  tRNA (guanosine18-2'-O)-methyltransferase
     421517 (TARBP1)
Transfer RNA biogenesis [BR:gga03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    421517 (TARBP1)
Chromosome and associated proteins [BR:gga03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    421517 (TARBP1)
SSDB
Motif
Pfam: SpoU_methylase
Other DBs
NCBI-GeneID: 421517
NCBI-ProteinID: XP_025004795
CGNC: 8360
Ensembl: ENSGALG00000011000
Position
3:38524548..38557386
AA seq 1586 aa
MEVVLADALLARGGDPGELLRAVCAPLSADRAEALRLLLQRLAAGGPRGEAESEALRRAA
WEVALERCRPLLRLGDGAAGGAERLRLGRAARGALRHCVQLCGAPLAARLARDALAELAG
GGPGAEAAVEALAAAAPRLEEPALVARCAAVALALVREESEGEAAAALVAGRLLPALGGN
GLALGRVWDGLLGGGPAPRAGRALLALSALADALLPRGPGAAAADARLCPRFWRLVQEGL
TERDGLCRKRARYLLKRAVDLSGGQAACLRCPPDGRHESSLFWWSAEENEKLLQFWETYI
LIMETLEENQIHVIKPVLPKLNSLYELAISGKEGCWLFHPSWHMCIYKRMFESENKTLTK
EGVLHFLELYETKHLPNSLGFSEFVIGPLMDALSESSLYSRTPGQLMGACPPLGMRLQKF
LTTYVMLLPEEEKGGFLLKFIQKMTNRHWCAVPILFLSMALAYIPTCKVLGTDGLHALRD
VLQCTMITHQILLRGAAQCYLLQTAMHLTDVERVSLPEVASFLLSLRPEESLRRDTVLWM
ELCSWLQVNDRCFGKSVCSDFEHQEISSLCLYVRGLVGEYLKTPASEGENCFMPDWFEAK
LVATMLLLAADVEQMRNKSSGKSNIKWIELEAFLNPLLDVLMKLGSNAYIPTLKTDKSLQ
LLLKLLQTRSLKCSNTQDDEVLFFIRRSLVTPMESVLEFILRRLTTNELSTVGDLDRCDL
YLALIPEIVNLCLQLSSKKLPTVRNFISSLINASIRNFRETNSTEELKLKEQVKKVTSIA
SLTVVCELMDRKPEAHLEDLPSVDALKRFTAFSQFNEVLKKPSYIEEKSGLCEETSSQGW
GRIVARYVRDQWICLRFVLNKFPTLAQEYEEGTSELSLTAKRSREILESALEALTILPSD
QVLPVFDCMSVLVPKLLNSLECLCIEVFDLAWKIISSLSNTQLIFWSNLKAFVRFIFDNE
VLAAAASAKGQAYAKIKEIILKLIDMSTTKTGVFNVVLSHCCQSWILPTFDNRSAVRNAF
LNAGNYCELITEGCVFGTVFRRDQRLIQDVHAFIENLGEKCAANVVTERYVSYNYNRDDH
YVRICAIKFLCLLDGSNILHKSFMEDIVIKLLEKDELVSRSRTRYYANSLQHRIKNRVWQ
TLLVLLPKLDQKFLCGILDKVFQAGFGNNQASVKYFIEWIVILSLHKYPQFLNKFWDCFC
YDEEKLKTSICTFLSVLSHFDTILQNTSEKKPILKKALLVVLQWCFNHNFSVRLYALVAL
KKIWAMCRMLDXEEFEALTPVIESSLQQVENMHGTGNARRNWQRIQDHFFFATFHPLEDY
SLETIFYTLPRLSEVAEDEWISLCKFERFTDIPLPPAFQWYRSRAKLLDLKPSDWSQQDT
GSSSVDADGQTEWTDVQKKIIPWKHSTPSSDLEMVLQDRAAKLGKSNSRLIVVASLIDKP
TNLGGLCRTSEIFGASALVVGSLHYVQDKQFQHLSVSAEQWLPLVEVKPSQLVDYLQQKK
TEGYTAIGVEQTAKSYDLTEYCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRS
LNVHVSGALLIWEYTRQQVIKHKQQK
NT seq 4761 nt   +upstreamnt  +downstreamnt
atggaggtggtgctggccgacgcgctgctcgcccgcggcggggatcccggcgagctcctg
cgggccgtgtgcgcgccgctctccgccgatcgcgcggaggcgctgcgcctcctgctccag
cgcctggccgccggcgggccgcggggcgaggcggaaagcgaggcgctgcggcgggccgcc
tgggaggtggcgctggagcggtgccggccgctgctgcgcctcggggacggggcggcgggc
ggcgcggagcggctgcggctgggcagggcggcgcggggcgcgctgcggcactgcgtgcag
ctctgcggggcgccgctggccgcccgcctggcccgcgacgcgctggccgagctggcgggc
ggcgggccgggcgcggaggcggcggtggaagcgctggcggcggcggcgccgcggctggag
gagccggcgctggtggcgcgctgcgcggcagtcgccctggcgctggtgcgggaggagagc
gaaggcgaggcggcggccgcgctcgtggccgggcggctgctgccggcgttgggcggcaac
gggctggcgctgggacgcgtgtgggacgggctgctgggcggcgggccggcgccgcgggcc
gggcgggcgctgctggcgctgagcgctctggccgacgcgctgctgccgcggggcccgggg
gcggcggcggcggacgcgcggctgtgcccccgcttctggcggctggtgcaggaggggctg
accgagcgggacgggctgtgccggaagagggcccgctacctgctgaagcgcgccgtggac
ctcagcggcggtcaggccgcctgcctgcggtgtcctccggacggccgacacgaatcaagt
ctgttttggtggtctgctgaggagaatgagaaactcctgcagttctgggaaacttacatt
ttgatcatggaaactttggaagaaaaccagatccatgtcataaagccagttttacctaaa
ctgaacagtttgtatgagcttgctatatcaggaaaagaaggttgttggttgtttcaccca
tcgtggcacatgtgcatttataaaagaatgtttgagagtgagaataaaacactgacaaag
gaaggagttcttcattttttggagctttatgaaacaaagcatcttccaaattcgcttggt
ttttcagagtttgttattggaccgttaatggatgccctctcagaaagttccctttatagt
agaacaccaggtcagctaatgggagcctgtcctcctttgggaatgaggctgcagaaattt
ttgactacttatgtgatgcttcttccagaagaagaaaaaggcggtttcctgttaaagttt
attcagaagatgacaaatcgccactggtgtgctgttcccattttgtttctttctatggct
ttagcatacatccctacatgtaaagtactgggcactgatggacttcatgctttaagagat
gtcctgcagtgtaccatgattacacatcagattttgttgcgtggagctgctcagtgctat
cttcttcaaacagccatgcatttgacagatgtggagagagtgtctcttccagaggttgcc
agctttcttttgtcccttagaccagaggagtccctgaggagagatactgtgttgtggatg
gagctttgcagttggctgcaagtgaatgacagatgctttgggaagtctgtgtgctctgat
tttgagcatcaggagatatcatcactatgtctgtatgtgcgtggtcttgtgggagagtac
cttaagacacctgcatctgaaggagaaaattgctttatgccagactggtttgaagctaag
cttgttgcaacaatgcttctgttggctgctgacgtggaacagatgaggaataaatccagt
ggaaaaagcaacataaaatggattgaactagaggctttcttgaaccctcttctggatgtc
ttgatgaaacttggcagtaatgcttacataccaacactgaaaacagataaaagcctacag
cttctcttgaagttattgcagacccgttcgttaaaatgttccaatacacaagatgatgag
gtgttgttctttatccggagatctctagtgacacctatggagagtgttcttgagtttatc
ctccggcggcttaccacaaacgagttgagtacggttggtgacctggatcgttgtgatcta
tacttagctttaattccagagattgtgaatttgtgcctgcagctcagctcaaaaaagtta
ccaactgtcaggaatttcatctcatccctgattaatgcctctattcgtaattttcgggag
acaaattctacagaggagctgaagcttaaagagcaagttaaaaaagtcactagcatagcc
tcgctcacagtagtttgtgagctaatggatcggaaacctgaagcacaccttgaagatctg
ccttctgtggatgctctaaagagatttactgccttttcccaatttaatgaagtattaaag
aaaccatcttacattgaagaaaaaagtggcttatgtgaggaaacatcatctcagggatgg
ggaagaattgttgcacgctatgtacgtgaccagtggatttgcctgcgttttgtcttaaat
aaatttccaacgttggctcaagagtatgaagaaggaacttcagaactgtcattaactgct
aaaaggtcaagagaaattctggagtctgcactggaagccctaactattcttccttcagat
caagttctacctgtgtttgactgcatgagtgtccttgttcccaagcttctgaactcactg
gagtgtctctgcatagaagtattcgacttggcttggaaaatcatatcctctttgagcaat
acacagctaatattttggtccaatctgaaagcttttgttcgcttcatctttgataatgag
gttttagctgctgctgcaagtgcaaagggccaagcatatgccaagataaaagagataata
ctcaagctcatagatatgtccactacaaaaactggagtcttcaacgtagtcctgagtcac
tgttgtcaatcatggatacttcccacttttgataacagaagtgctgtgagaaatgctttc
ttaaatgctgggaattactgtgaacttatcactgagggttgtgtctttggaactgtattt
aggagagatcaaaggcttattcaggatgtgcatgccttcatagaaaatcttggagaaaaa
tgtgcagcaaatgttgttaccgagaggtatgtatcttacaattacaaccgagacgatcac
tatgtacggatctgtgctattaaatttctatgcttgttggatggatcaaatatcttgcat
aagagctttatggaagacattgtcatcaaactacttgagaaagatgaactggtgtccaga
tctagaacacgctattatgcaaactcattacagcatagaattaaaaaccgggtctggcaa
acactcctcgttcttcttccgaagctggatcagaagttcttgtgtggaatccttgacaaa
gtctttcaggctggatttggtaacaatcaagcatctgtgaagtacttcatagaatggatt
gttatcttgagtctacataaatatccccagtttctcaataaattctgggactgcttttgc
tatgatgaagaaaagcttaaaacaagcatctgtacctttttatcagtgctatcacatttt
gacaccattcttcaaaatacctcagagaagaagccgattctgaagaaagccctcctggta
gttctgcagtggtgtttcaaccataatttcagtgtccgactttatgcactggttgcactt
aaaaaaatctgggctatgtgcagaatgttggatngtgaagaatttgaagccctgacacca
gttattgagtcgagccttcaacaagtggaaaacatgcatggcacggggaatgctagaaga
aactggcagagaatccaggatcatttcttctttgcaacatttcacccactcgaggattat
agtctagagacgatattttatactcttccacgcctttcagaagtggctgaggatgaatgg
atctctctctgtaaatttgagcggttcactgacattcctttgccaccagcatttcagtgg
tatcgttctcgagctaaacttcttgacctaaaaccaagtgactggtctcagcaagacaca
ggttcaagttcagttgacgcagatggccaaacagagtggactgatgtgcagaaaaagatc
ataccctggaaacacagtactcctagttcagacctggaaatggtattgcaggaccgtgct
gctaagcttggtaaatcaaacagcagactgattgtggtggcttcacttattgataaacct
accaatttaggaggtttatgccgtacaagtgaaatatttggggcatctgcactagttgtt
ggcagccttcattacgtacaggacaagcagttccagcatctgagtgtttctgcagagcag
tggctcccccttgtcgaggtgaaaccctctcagcttgttgattatttacagcagaagaaa
acagaaggctacactgctattggggtggagcagacagccaaaagttatgatcttacagaa
tactgctttccagagaagtcactgttactgctggggaatgaacatgaaggaatcccagca
aacctgattcaccacctggacgtctgtgtggaaattcctcagcaggggattattcggtca
ctcaatgttcatgtaagtggagctctgctgatctgggaatacacgaggcaacaagtgatc
aagcacaaacaacagaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (50)   

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