KEGG   Gallus gallus (chicken): 426493
Entry
426493            CDS       T01006                                 
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
  KO
K15172  transcription elongation factor SPT5
Organism
gga  Gallus gallus (chicken)
Pathway
gga03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    426493 (SUPT5H)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gga03021]
    426493 (SUPT5H)
   03019 Messenger RNA biogenesis [BR:gga03019]
    426493 (SUPT5H)
Transcription machinery [BR:gga03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     426493 (SUPT5H)
  RNA polymerase I system
     426493 (SUPT5H)
Messenger RNA biogenesis [BR:gga03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     426493 (SUPT5H)
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N DUF3912 DUF150_C Ribonuc_P_40
Other DBs
NCBI-GeneID: 426493
NCBI-ProteinID: NP_001026555
CGNC: 10651
Ensembl: ENSGALG00000039160
UniProt: Q5ZI08
Position
32:149457..157062
AA seq 1079 aa
MSDSDDSNFSEEESEHSSEAEEAEEAEAEEERASAAGSEKEEVEEEEEEEYDEEEEEEDD
DRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGAR
RLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVK
CKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVG
NLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQI
SLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEG
NRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPG
DNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAG
RFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLD
PQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVI
DGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGSFA
PMSPRISSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDAT
ESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYG
SQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSP
QGYGGTPNPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSP
QSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTP
GSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVTGGMCSVYLKDSEKVVSISSE
HLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA
NT seq 3240 nt   +upstreamnt  +downstreamnt
atgtcggacagcgacgacagcaacttctcggaggaggagagcgagcacagcagcgaggcg
gaggaggcggaggaagccgaggccgaggaggagcgtgccagtgcagcgggcagcgagaag
gaggaggtggaggaggaggaggaggaggagtacgatgaggaggaggaggaggaagatgac
gaccggcctgctaagaagccacggcacggcggctttatcctggatgaagctgatgtggac
gatgaatacgaggatgaggatcagtgggaggatggggccgaggacatcctggagaaagaa
gagattgaagcttccaacatcgacaacgtggtgttggatgaggaccgctctggtgctcgg
cggctgcagaacctctggagggaccagcgtgaagaagagctgggcgagtattatatgaag
aaatacgccaagtcctcggtgggagagactgtttatggtggctccgatgagctctcagat
gacataacacagcagcagctgctgcctggagtcaaggatcccaatctctggacggtgaaa
tgcaagatcggagaggagcgtgctacagctatcgctctgatgcggaagttcattgcctac
caattcactgacacgcccctgcagatcaagtcggtggtggcccccgagcacgtcaaagga
tacatctacgtggaggcctacaagcagacgcacgtgaagcaggcaatcgagggggtagga
aatctgcggatgggctactggaaccagcagatggtccccatcaaggagatgacagacgtg
ctcaaggtagtgaaggaggtaaccaatctcaagccgaagtcctgggtgcgtctgaagagg
ggcatctacaaggacgacatcgcccaggtggattatgtggagcccagccagaaccagatt
tccttaaagatgattccccgtattgactttgaccgtatcaaagcccgaatgagtctgaag
gactggtttgccaagaggaagaagttcaagcgaccccctcagcggcttttcgatgctgag
aagatccggtctctgggaggcgatgtggcttccgatggagacttcctcatctttgaaggc
aaccgctacagccgcaagggctttctcttcaagagcttcgccatgtcagcagtgataacg
gagggtgtgaagcccaccttgtcagagctggagaagtttgaagaccagcctgaaggcatt
gacctggaggtggtgacggagagcacagggaaggagcgcgagcacaacttccagcctggt
gacaacgtggaggtgtgcgagggtgaactgatcaatctgcagggcaagatcctcagcgtc
gatggcaacaagatcactatcatgcccaaacacgaggacttgaaggacatgctggaattc
ccagctcaggagctgcggaaatatttcaagatgggtgaccacgtgaaggtgattgcaggc
cgctttgagggtgacacgggcctcattgttagggtggaggagaacttcgtcatcctcttc
tcagacctcaccatgcacgagctcaaggttctgccacgggacctgcagctctgctcagag
acggcgtcgggtgtggatgtggggggtcagcacgaatggggtgaactggtgcagctggac
ccccagacagtgggggttattgtgcgactggagcgtgagaccttccaggtgttgaacatg
tatggaaaggtggtgacggtgcggcaccaggctgtcaccaggaagaaggacaaccgcttc
gccgtcgccttggactcagagcagaacaacatccacgtcaaggacatcgtcaaagtcata
gacgggccccactcgggtcgtgagggagaaatcaggcacctcttccggggctttgccttc
ctgcattgcaagaagctggtggagaacggtggcatgtttgtctgcaagacccgacacctc
gtcctggccggtggttccaagccgagggacgtcaccaacttcactgtgggcagctttgct
cccatgagccctcgtatcagcagcccgatgcatcccagtggggctggccagcgcggtggc
tttggtggaggtggcatgagccgtgggcgcgggcggcgggacaacgacctcattgggcag
acggtgcgcatctcccagggaccttacaaaggctacattggagtggtgaaggatgcaaca
gagtcgacggcccgggtggagctgcactccacctgccagaccatctcagtggaccgccag
cgcctgaccactgtgggttcgcggcgcccgggtgggatgacatcgacctatggacgcacc
cccatgtatgggtcccagacccccatgtatggctctggctcccgcactcccatgtatggc
tcccagacacccctgcatgacggcagccgcacgccacactatggctcacagactccgctt
cacgatggcagccgcacgcctgctcagagcggtgcttgggaccccaacaaccccaacaca
ccttccagagccgatgaggactttgagtatggctttgacgacgagcccacaccctcaccg
caaggctacggcggcacccccaacccgcagacccctggttaccccgacccttcatcaccg
caggtcacccagccgtacaacccccagacccctggcacgccagccatgtacaacactgac
cagttctcaccctacgctgtgccatcgccacagggctcctaccagcccagccccagcccc
cagagctaccatcaagtggcccccagccctgtgggctatcagaacacccattccccagcc
agctaccacccaacgccatcgccgatggcctaccaggcaagccctagccccagcccagtg
ggctacagccccatgacacctggggcaccatctccagggggctacaacccccacacccct
ggttcaggcatcgagcagagctccagcgactgggtcaccactgacatccaggtgaaggtc
cgggacacctatctggacagccaggcggtgggacagaccggcgtcatccgcagtgtcacg
ggcggaatgtgctctgtgtacctgaaggacagcgagaaggtggtgagcatctccagcgag
cacctggagcccgtgacccccaccaagagcaacaaggtgaaggtgatcctgggcgaggac
cgcgaggctaccggcatcctgctcagcattgacggtgaggatgggatcgtgcgcatggac
ctggatgagcagctcaagatcctcaacctccgcttcctgggcaagctgctggaggcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (36)   

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