KEGG   Gallus gallus (chicken): 427218
Entry
427218            CDS       T01006                                 
Symbol
TNPO1
Name
(RefSeq) transportin-1 isoform X2
  KO
K18752  transportin-1
Organism
gga  Gallus gallus (chicken)
Pathway
gga03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    427218 (TNPO1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gga03019]
    427218 (TNPO1)
   03009 Ribosome biogenesis [BR:gga03009]
    427218 (TNPO1)
Messenger RNA biogenesis [BR:gga03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     427218 (TNPO1)
Ribosome biogenesis [BR:gga03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    427218 (TNPO1)
  Pre-60S particles
    427218 (TNPO1)
SSDB
Motif
Pfam: HEAT_EZ HEAT HEAT_2 Arm IBN_N Vac14_Fab1_bd Cnd1 PDS5 Adaptin_N MMS19_C CEP104-like_TOG Dopey_N UNC45-central RTP1_C1
Other DBs
NCBI-GeneID: 427218
NCBI-ProteinID: XP_025000578
CGNC: 11160
Ensembl: ENSGALG00000015014
Position
Z:complement(25031377..25112305)
AA seq 890 aa
MEYEWKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMMHIDAFIENLFALATDEEPEVRKNVCRALV
MLLEVRMDRLLPHMISIVEYMLLRTQDQDENVALEACEFWLTLAEQPICKDVLCRHLTKL
IPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDIRPRFHRSRTVAQKHEEDGIEDRDDD
DDEIDDDDAISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLQRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIHKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLHNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPNGVFQDFIFFCDAVA
SWISPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq 2673 nt   +upstreamnt  +downstreamnt
atggagtacgagtggaagcccgacgagcaggggctccagcagatcctgcagctgctgaag
gaatctcagtccccggacaccaccacgcagagagccgtgcaacaaaaactagaacaactc
aatcagtatccagatttcaacaactacctgattttcgttcttacgaagttgaagtctgaa
gatgaaccaacgcgttccttgagtggtctcatcttgaagaataatgtaaaagcacatttt
cacaacttcccaaatggggtaactgacttcatcaaaagtgaatgtctgaacaacattggt
gattcctctcccttaattagagctaccgtaggtattctgataacaaccattgcttcaaaa
ggagaattacagaattggcctgaacttttaccaaagctttgcagcctcttagattcagag
gactacaatacttgtgagggtgcatttggcgctcttcagaagatatgtgaagattctgct
gaaattttagatagcgatgtgttggaccggccactcaatatcatgatacctaaattctta
cagttcttcaagcacagcagtccaaaaataagatctcatgctgttgcatgcgtcaatcaa
tttatcatcagtagaactcaagctcttatgatgcacatagatgcttttattgagaatctt
tttgcactggctactgatgaggagcctgaagtacgcaaaaatgtttgccgtgctctggta
atgttgctggaagttcgaatggatcgccttcttcctcatatgattagtatagttgagtac
atgcttctaaggacccaggaccaagatgaaaatgtggctttggaggcctgtgagttttgg
ctgactttggctgaacaacccatttgtaaggatgttttatgtcggcatcttactaagctg
ataccagtgctggtgaatggtatgaaatattccgagatagatattattttgctgaagggg
gatgttgaagaagatgaagctattccagatagcgaacaggacataagacctcgttttcat
cgttcgcgaacagtagctcagaaacacgaggaagatggcattgaagatcgtgatgatgat
gatgatgaaattgatgatgatgatgctatttctgactggaatttaaggaaatgttctgct
gctgctctagacgttttggccaatgtatttcgtgatgaacttctgccacacatcttgccc
cttttgaaggaattgctcttccatcccgaatgggtagttaaggaatcgggtatccttgtt
cttggagcaattgctgaaggctgcatgcagggtatgattccatatcttcctgagctgatc
cctcaccttattcagtgcctctctgacaaaaaggctcttgtgcgctccattacatgctgg
actcttagtcgctatgcacactgggtagttagtcaacccccagacacatacttgaagcca
ttaatgactgagttgctacagcgtatcctggatagcaacaagagagtacaagaagctgcc
tgcagtgcctttgctactctagaagaggaggcttgtacagagctcgttccttatcttgca
tatatacttgacactttggtcttcgcatttagtaaataccagcataaaaacctgcttatt
ctttatgatgctataggaactctagcagattctgtaggtcatcatctaaataaaccagaa
tatattcagatgctaatgcccccattaatccacaagtggaacatgttgaaggatgaagat
aaagatctctttcctttattagagtgcctgtcgtcagttgctactgccttgcaatctggc
tttcttccatactgtgaacctgtgtaccagcgttgtgtaaatctagtgcagaagactctt
gcacaagccatgttgcacaatgctcagccagatcaatatgaggctccagataaggacttc
atgattgtggctcttgatttactcagtggtttagctgaaggtcttggaggcaacattgag
cagctggtagctcggagcaatatcttgacactgatgtaccaatgcatgcaggataaaatg
cctgaagtacgacagagttcttttgcgctgttaggtgatctgacaaaggcatgttttcag
catgttaagccttgcatcgctgatttcatgcccattttgggaaccaacctaaaccctgaa
ttcatttctgtgtgtaacaatgctacctgggcaattggagaaatctccattcagatgggt
atagagatgcagccttatattccaatggtgttgcaccagcttgtagaaataattaacaga
cccaacacaccaaagacattgttagagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgcacctct
ctccggaacataagagacaatgaggaaaaggactcagcattccgtgggatatgtaccatg
atcacagtcaaccccaatggcgtattccaagactttatttttttttgtgatgctgttgca
tcgtggattagtccaaaagatgatctccgagacatgttctgtaagattcttcatgggttt
aaaaatcaagttggggatgagaattggaggcgtttctcagaccagtttcctcttccctta
aaagagcgccttgcagcttactatggagtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (55)   

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