KEGG   Gallus gallus (chicken): 422910
Entry
422910            CDS       T01006                                 
Symbol
POLR1A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    422910 (POLR1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gga03021]
    422910 (POLR1A)
Enzymes [BR:gga01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     422910 (POLR1A)
Transcription machinery [BR:gga03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     422910 (POLR1A)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 TssR_VWA Pox_C7_F8A HMG_box
Other DBs
NCBI-GeneID: 422910
NCBI-ProteinID: XP_015141475
CGNC: 11758
Ensembl: ENSGALG00000038160
UniProt: A0A8V0ZAD3
Position
4:complement(85433935..85464432)
AA seq 1710 aa
MRPPKVVPWWRFAKVSFGLYTAEEIRKLSVKAITNPQYLDNVGNPSINGLYDLALGPPDS
KEACATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLL
LSQLKVLEHGLLHAVHDLEVILNRFLEQSADATALEIEEELNHHVDEILQSQELSDQCSN
VKNVCECRNKLISQFWKAHMTSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVLRKAGEEGI
GDEPAAIDETQLGKRGYLTPMTAKEFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFL
DLLVVPPSRYRPINRVGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIVENE
IQTETGESDEPLDRSVLATIPGQTIADKLYNAWIRLQTHVNIVFDSDMDKMMTEKYPGIR
QLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVK
ELRQAVINGPKVHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVC
RHIKSGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYR
GLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIGGKAWMRG
PANSCLNLDSLCESQVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCL
GRLFTAYLQLYRGFTMGIEDILVKPEADRKRHKIIKKSSQCGIEVVRAALNLPETSSCED
VQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSG
AKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKP
SEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLNEALARMESHQAKQQFKAIRKWWARHQN
SVQREGGFLLFSQKKMASVKTQIPGGESINGRDPATLQLLKMWYELDEKKRRKYLKKANK
CPDPSLAVWRPDSYFASVSETFESGVEDYINKRECKSRGGCMQPALSSDRLKDLLYLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PMMSVPVLGTKKAHKKVKQLKKQLTRVCLAEVLQKVELEESLHLKNKENSHRLYKIKFCF
LPYEYYREEKCVKPRDILRFMETRFFKIFLEAIRRRRAKMSSFTEVSTRKATRKDLEGVG
DKAQNNQEAPEGEEEEKIVDAEPDEGDGDATEAKMRRNQEEEVDYESEEENGEENTAENP
EDEEAESEKEERAQDADEDQNGADGDDSQHLPFMSQTKKERDQLLKSAEVRVNAVLNSHP
SIQDYTFDTENELWCEVSLTLPLMKVYFDISSLXSFLTRNTVIHEXKGITRCLLNESTNE
KGEKELILHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFA
VYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGAH
DELRSPSACLVLGKVVKGGTGLFDLKQPLT
NT seq 5133 nt   +upstreamnt  +downstreamnt
atgaggccgccgaaggtggtgccgtggtggcggttcgccaaggtttccttcgggctgtac
accgccgaggagatcaggaaactgagcgtaaaagccataacgaatcctcagtacttggat
aatgtggggaatccttctattaatggattgtacgacctggctctggggcctcctgattcc
aaagaagcgtgtgcaacgtgcatgcagaacttcagcaactgcccgggccactttggccat
atagaactgcctctgactgtctacaaccctctgttttttgataaactgtatcttctaatt
cgaggttcttgtttaaattgtcacatgctgacgtgtactcgagctgtggttcatttgctg
ctaagtcagctgaaggttctggagcatgggttgcttcatgctgtccatgatcttgaagtc
atcttaaataggtttttagagcaaagtgcagatgcgacagctctagaaattgaagaagag
ttgaatcaccatgttgatgaaatattgcaaagtcaagaactgagcgatcagtgttcaaat
gtgaaaaatgtttgtgagtgtagaaataaattgatatcccagttctggaaagcacatatg
acttcgaagaaatgcccaaactgcaaatcaaggagatcactggtgcgaaaagagcataac
agcaagctgacagtaacttatccttctacagtgttacgtaaggcaggagaggaaggcatc
ggggatgaaccagcagctattgatgaaactcagttagggaagagaggatacctgacacca
atgactgccaaggagttcgtcttggctctgtggaagaatgaaggtttctttctgcgttac
ctcttccctgggatggatccccataaggactcagctttcagcccagatatgtttttttta
gatctgcttgtggttcctccttcaaggtatcgccctataaatcgtgttggagaccggatg
tttacaaatggtcagactgtgaacctgcaggctgtcatgaaagatgccaccctgatcagg
aagctcttggttttcatggcaaaagaacaatgccagccaattaaaattgtggaaaacgaa
atccaaacagagacaggtgagagtgatgagcctctggaccgttctgtgctggcaactatt
ccaggacagaccattgcagacaagctttataacgcttggattcgtcttcagacccacgtc
aacattgtgtttgacagtgacatggacaaaatgatgactgagaaataccctggtattcgt
cagctattagagaaaaaggaaggactgttccgcaagcacatgatgggaaaacgtgtggat
tttgcagctcgatcggtcatttgccctgatatgtacataggtaccaatgagattggcatt
cccatggtatttgctaccaaactgacctaccctcagccagtcactccctggaatgtcaaa
gagctgaggcaggctgtcataaatggcccaaaggttcaccctggggcttccatggtcatt
aatgaagatggttctcgtacagtgctgagtgcaagcagcttgacccagagggaagccata
gctaagcagctcctcacgccttcttcaggtgcaccccagtcaggactgaagattgtttgc
cgtcatattaaaagtggagatgtcctgttactgaaccgccagcccactcttcatagaccc
tccatccaagctcaccgggccagaatcctgcctggagaaaaggtgctgaggctccactat
gccaactgcaaggcgtacaatgctgattttgatggtgatgaaatgaatgcccatttccca
cagaatgagctgggtagagcagaggcctacaccttagcctttactgatgaacagtatcta
gttccaaaggatggcaaaccacttcctggactcatccaggaccacatgatttctggagtc
agcatgacaatccggggctgctttttcacaagagagcaatatatggagcttgtttatcga
ggactaacagacaaaaaaggaagaattaaaacctttcctcctgccattatgaaaccacaa
cgattatggacaggaaaacaggttgtttctacactgctaataaacatcattccagaaaac
catgtcccactgaatttgactgggaaagctaagataggtgggaaagcctggatgagggga
cctgcaaacagctgtctaaatcttgactcactgtgtgaatctcaggttattattagaagt
ggggaattactttgtggtgtgttggacaaagctcactttggcagctctgcctatggccta
gtccactgctgctatgaaatctatggaggtgaaaccagtggaaaagtgctaacatgttta
ggacgtctctttactgcttatctgcagctctacaggggatttacaatggggattgaagat
atcttggttaaacctgaagcagaccgcaaaagacacaaaatcatcaaaaagtcaagccag
tgtggtattgaagttgttagagcagctcttaatttgccagaaacatcatcatgtgaagat
gtccaagggaaatggcaggatgcccatctctgcaaagaccagagggattttaacatggtt
gacctgaaattcaaggaggaagtaaacaattacaacaatgaagttaacaaggtttgcatg
ccgtttggtctgcataggagctttcctgagaacaatttgcaattgatggtacagtcagga
gccaaaggatccactgtaaatacagtacagatttcttgtttgctgggccagattgagttg
gaaggtcgaaggcccccactgatggcatctggcaaatctctgccgtgtttccaaccttat
gacttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcaaacct
tctgaattcttctttcactgcatggctggcagggaaggtctcgtggatacagctgtcaaa
accagccgttctgggtacctacaaaggtgtatcataaagcatttggaaggactggtggtt
cagtatgacctgacagtacgggacagcgatggcagtgtggtgcagtttctgtatggagaa
gatgggcttgatatccctaaaactcagttcttacaacccgagcagtttcctttcattgct
gacaactatgaggtgatccagaagacaaaccatctgaacgaagccttagcaaggatggag
tctcaccaagcaaagcagcagtttaaagccatcagaaagtggtgggccaggcaccaaaac
tctgtgcaaagagaaggaggttttctgttgttttcccagaagaaaatggcaagtgtaaag
acacaaatcccaggaggagaaagcataaatggaagagatcctgctactttacagttattg
aagatgtggtatgaactagatgagaagaaacgaagaaagtatctaaagaaggcaaataag
tgtcctgacccaagccttgctgtttggcgtccagattcctactttgcatctgtttcagaa
acatttgaaagtggagtcgaagattatatcaacaaacgagaatgtaagagcagaggaggt
tgcatgcaaccagcactttcttccgatagattaaaggatttgttatatttgaagtggcaa
cgatctctttgtgacccaggagaagctgtgggtcttcttgcagctcagagtattggggaa
ccttccacacagatgactctgaacaccttccattttgctggcagaggtgaaatgaacgtc
acattgggtattccaaggttgcgggagatcttgatggtagccagtgcaaatattaaaaca
ccaatgatgagtgttcctgtgctcggtaccaagaaagctcacaagaaggtgaaacagctc
aagaaacagctcacaagagtgtgcttagctgaggtcttgcagaaagttgagttggaggaa
tccctgcacttaaagaacaaggagaacagccatcgcctctacaaaatcaaattctgcttc
ttgccctatgaatattatcgagaggagaagtgtgtgaagcccagggacatcttacgcttc
atggaaacaaggttctttaaaattttcctggaggccattagaaggaggcgtgcaaagatg
tcatcttttactgaagtcagtacccgcaaagcaactcgtaaagatttagaaggtgttgga
gacaaggcacaaaataatcaagaagctccagaaggtgaggaagaagaaaagattgttgat
gcagaacctgatgaaggggatggtgatgctacagaagcaaaaatgaggaggaaccaggaa
gaagaggttgattatgagagtgaagaagagaatggggaagaaaatactgctgagaatcca
gaagatgaagaggctgaatcagaaaaggaagagagggcccaagatgctgatgaagatcaa
aatggggcagatggcgatgattctcaacatcttccctttatgtctcagactaaaaaagag
agagatcaattacttaagtcagcagaggtgcgagtaaatgctgtcctgaacagccaccca
tctatacaggactacacatttgacactgaaaatgaactttggtgtgaggtttcgttgacg
cttccattgatgaaggtgtactttgatatctcctctttgncttctttcctcacacgaaac
acggtcatacatgagntgaaggggatcacacgatgtctcttgaatgaaagtaccaatgag
aaaggagagaaagaactcattctgcacactgaagggataaatcttgcagagctgttcaga
tactctgatattttggacctgaacagactttattccaatgatattcatgccatggctaag
aattatggtattgagtctgccctgagggtcgttataaaggaaataaaagatgtatttgct
gtatatggcattgtggtagaccctcggcacctctcgcttgtggcagactacatgtgtttt
gaaggagtttataaacccatgaatcgctttggaatccaatccagctcctcccctctgcaa
cagatgacatttgaaaccagttacaaattcctgaaggaagcaacaatgatgggtgcccac
gatgaactgagatccccttctgcatgcctggtgctcggaaaagttgttaaaggagggact
ggtttgtttgacctcaagcaacccctcacgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (8)   
   Pfam (8)   
All databases (69)   

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