KEGG   Gossypium hirsutum (upland cotton): 107885964
Entry
107885964         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
  KO
K03018  DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107885964
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107885964
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107885964
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     107885964
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 EcoEI_R_C
Other DBs
NCBI-GeneID: 107885964
NCBI-ProteinID: XP_016665225
UniProt: A0A1U8HGM6
Position
A03:complement(6865722..6878385)
AA seq 1398 aa
MQQRSQDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDPQSRPIEG
GLLDPRMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCS
RILLDDKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKK
APKMIGVFHDRSKVNDNSSEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDCE
LLYLSDRPEKFIITNIAVPPTAIRPSVPVDGSQSNENDITERLKRIIQANSSLRQQLVDS
NAAFHCLNGWDLLQVDVAQYINSDVRGVPTEMQPSRPLSGFLQRLKGKQGRFRGNLSGKR
VEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGAVK
VRYPDGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIM
PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLVAS
TQDFLTSSFLITRRDTFYDRATFSLICSYMSDAMDLIDLPTPTLLKPVELWTGKQLFNVL
LRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELICGQLGKA
TLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLNDAK
GVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMRELHW
RNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGF
VANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCRNA
SGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVDQKYLPADAIPQMLEEQ
VVKHDPDGVCSEAFKKSLKGFLEGQKNELKRVLQLVSNSAQKNEILEDVSHKICGITDRQ
LEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI
KEIINAAKKISTPIITAELEFDSNVNIARMVKGRIEKTVLGQVAKSIKIVMTSRLASVVI
SLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVPPADRSRIHFELH
SLKNLLPLVVVKGIKNVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGLQTVMGVEGIDG
RKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLADVMTFRGEVLGI
TRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIPMQLGTGILKVM
QRVDPLPLLQYGADPVLS
NT seq 4197 nt   +upstreamnt  +downstreamnt
atgcagcaaagatcacaagatattgtgtttacaaaacggccgtacatcgaagatgtcggg
ccacgaagaattaaaagcatcaaattctctatgttttcggattcagagatagccaaagct
gccgaagttcaagtatataagggtgtttactatgatcctcaaagccgccccattgaaggc
ggcttattggatcctcgaatgggtcctccaaataagtccggcaaatgcgcaacctgcgat
ggaagtttcggggactgtccagggcattacggatacttacctcttgtcctccctgtttat
aatgttgggtatttaagtacaattttagacattttaaagtgcatttgtaagtcttgttct
cgtattcttttggatgataaattagccaaagattatctgaaaaagatgagagctccaaag
actgaaccattaaagaaggctgaaataatgaaaagtgtagtaaagaaatgtactgctatg
gctggtggtaaagctgtgaagtgctcgagatgtggatatctaaatggcacagtgaagaag
gctccgaagatgataggggtttttcatgatcgttcaaaagttaatgacaacagttcggaa
gaattgaaatctgcaatttcacacacaaaagagtccaagtcgtccatcaacacttcttct
gttctgaaccccgtcaaagtcctttcactttttaagaggatgactgatgtggactgtgaa
ttgctttatctttctgatagacctgagaagttcattattacgaatattgctgtgccacct
acagctatccgaccttcagtccctgtggatgggtcacagagcaatgaaaatgacattact
gagaggttgaaaagaattattcaggcaaatagtagccttcgtcagcaattagtagattca
aatgctgcatttcattgtctgaatggctgggatttgcttcaagtagatgttgcacaatac
atcaatagtgatgttcgtggtgttcctactgaaatgcaaccatcaagaccactgagtggc
tttcttcagcgcctaaaagggaagcagggacggtttcgtgggaacttatctggaaaacgt
gttgaatttactggtcggactgttatatcacctgaccccaatctgaaaatcactgaggtg
gctattccaatccatatggctcggattttaagttatccagaacgtgtttccagtcacaat
atagagaagctaagacagtgtgttcgtaatggcccatccaaataccctggtgcagtgaag
gtcagatatcccgatggttctgcaaggctcttgataggtgattatagaaagcgtcttgct
gatgaactaaagtttggttgtattgttgaccgccatttagaagatggagatattgttctt
ttcaatagacagccaagcttgcatagaatgtctatcatgtgccatagggcaagaataatg
ccgtggagaacgttacgattcaatgaatctgtttgtaacccatataatgctgattttgat
ggtgatgaaatgaacatgcatgtcccacaaacagaagaggctcggacagaggcactcatg
ttgatgggggtgcaaaataatttgtgcacgccaaaaaatggagaagttttggttgcttcc
actcaagattttttaacatcttccttccttattactaggagagatactttttatgaccgt
gcaactttttctctgatatgttcctacatgagtgatgcaatggatcttatagatttgccc
actccaacattacttaagcctgtagagctttggaccggtaagcaattgttcaatgttcta
ttacgcccacatgcaagtgtgagagtttacttgaatcttaccgttaaggagagaaactac
tcaaggaagatcgccaaaaggattggtgacaaagaaatagaagtagaaacaatgtgtcct
aatgatggatttgtctatattcggaatagtgaacttatatgtgggcaattggggaaggct
actttaggaaatggaaacaaggatggactttattctattcttctcagagactacaatgcc
catgctgctgctacctgcatgaatcggctagctaagatgagtgctcgttggatagggaat
catggcttttcgattggaattgatgatgtccaaccaggaaaacgtttgaatgatgcaaaa
ggagtaacactttcagggaattataaaaaatgtgatgaacagatacagatgtttaatgaa
gggaagctacagcttaaaccgggttgtgatgctgctcaaacactagaagctaatataact
gaagtattgaataaaattcgggatgaaacagggaaggtatgcatgagagaactacattgg
agaaacagtccactgatcatgtcgcaatgtggttccaagggttctgctataaatataagt
caaatgattgcatgtgttggtcagcagtcagttgggggacgtcgtgctcctaatggattt
atagatcgtagccttcctcattttcatagaggatcaaaaacaccagcggctaaaggcttt
gttgcaaattcattctacagcggtttgacagctacagagtttttctttcacacgatgggt
gggcgagagggccttgtggatacagctgtaaaaacagctgagacaggatacatgtctcgc
agactgatcaaagcattggaggacttgagcattcattatgataacacttgtcgcaatgca
agtggatgcatagtgcaatttatttatggggatgatggcatggatcctgcatctatggag
ggaaaaagtggatttcctttgaattttgatagattattaatgaaagtaaaggctacctgt
cctccagttgatcagaaatacttacctgctgatgctataccacaaatgttagaagagcag
gtagtcaaacatgatccagatggggtttgctccgaagccttcaaaaaatctctgaaaggg
ttccttgaaggtcagaagaatgaactaaagagagtgctgcagttggttagcaattctgca
cagaagaatgagatacttgaggatgttagccataaaatatgtggtatcactgacaggcag
ttggaggttttcatcagaatttgcattggtcgttatcgatcgaaagtaattgaagctgga
accgccattggagctattggagctcagagtattggtgaacctggaacacagatgacattg
aagacatttcactttgctggagttgcaagcatgaatattacacaaggagttcctcgtatc
aaagaaatcattaatgcagccaaaaaaattagcactcctataattactgcagaacttgag
tttgatagtaatgtgaacattgcacggatggtaaaaggtcgaattgagaaaactgtttta
ggacaggttgctaagagcatcaagattgtaatgacttcaagattagcatcagttgtaatc
tcccttgacatggaaagaatccaagatgcgcaattgcatatagatgcaaatgttgtgaaa
gaatcaattttgcaaacaccgaagctgaaactaaaggagcagcatgtgaaggttttggat
gttaaaaagttggaagtagttcctccagctgatagaagtagaattcattttgaacttcat
tctcttaaaaatctgcttccactggttgtggtaaagggcataaaaaatgttgaacgtgtt
gttattgctgagaagaaaaaagacaataaaagtcagaacaaagaagcgaaaaagctttac
cagttgtttgtagaaggcatgggactccaaactgttatgggtgttgaaggaattgatggg
cggaagacaatgagtaaccatgttatggaaatgctgcagatattgggaattgaagctgca
agatcatgcataatcaatgagatagcagcaactatggcaagtcacggaatgagcatagac
atacgccatatgatgcttctagcagacgtgatgacatttaggggggaagttcttggcatc
acaagatttggaatccaaaaaatggacaaaagtatattgatgctggcttcatttgagaag
acaggtgatcacctttttaatgcttctgttaatgggagggatgacaagattgagggggtt
accgagtgcatcatcatgggcatcccgatgcaattaggcactggaatactcaaagttatg
cagagagttgatccccttcctctgcttcaatacggagcggatcctgttttatcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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