KEGG   Gossypium hirsutum (upland cotton): 107889299
Entry
107889299         CDS       T04793                                 
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X3
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107889299
   03036 Chromosome and associated proteins [BR:ghi03036]
    107889299
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     107889299
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     107889299
    SLIK complex
     107889299
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C Chromo CHD1-like_C HDA2-3 ResIII DEAD SWI2_SNF2
Other DBs
NCBI-GeneID: 107889299
NCBI-ProteinID: XP_016669155
UniProt: A0A1U8HT01
Position
A09:68362467..68383316
AA seq 1751 aa
MMAFFRNYSNDTDAHDVLEEKSQGQSIGRIRSSVGSDDVGGSGTFSEREFDINAHYQSDR
EPDGSVRLHNEVAAASGAGVSNSNFQPPGRRVAPGKWGSTFWKDCQPMDHQGGSDSGQDS
KSDHRNLEASDYNSSDDRDDRLDLEDDEAQKGKAQRGHSDVPADEMLSDEYYEQDGEEQS
DTMHYTGLSNSVGLNTRPKSKPASLSSTMSRSSRALNNFNYDDEESNHDVDYEEEEEEDE
DDPDDADFEPDYDAASGHAGNQFVKQDKDWDGEDSEEEDNSDGDVDISDEEDSYYRKKPK
GVQRVKVGLSVKPTKEHKSTNRQRRGKSSFDEDECSAEDSDSESVHDFKSIARSGGNHRI
SSARSNTFISMGRNSEVRTSSRSVRKVSYVESEESEEIEEVKKKKTLKDEAEEEDGDSIE
KVLWHQPKGMADDAIRNSRSTEPVLLSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFFE
LQNLSGFKKVLNYTKKVMDDAKYRKALSREEIEVNDVSKEMDLDLIKQNSQVERVIVDRI
SKDASGNVMSEYLVKWQGLSYAEATWEKDIDITFAQDAIDEYKARDAAMAVQGKIVDHQR
KKGKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM
LGFLQNAQQIPGPFLVVVPLSTLSNWAKEFKKWLSDMNVIVYVGTRASREVCQQYEFYND
KKIGRPIKFNTLLTTFEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKN
KLLITGTPLQNSVEELWALLHFLDPHKFESKDDFVQNYKNLSTFDENELANLHMELRPHI
LRRVIKDVEKSLPPKIERILRVEMSPLQKQYYRWILERNFHDLNKGVRGNQVSLLNIVVE
LKKCCNHPFLFESADHGYGGDTSMNDISKLERIILSSGKLVILDKLLTRLHETKHRVLVF
SQMVRMLDILAEYLLLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLERKETKKGSHFDKNELSAILRFGAEELVKEDRNDEESKKRLLSM
DIDEILERAEKVEEKVGEEEGNELLSAFKVANFCNAEDDGTFWSRWIKPDAIAQAKDALA
PRAARNTKSYAETSQPERSNKRKKKGSDSQELQERVQKRRKAEYSAPLAPMIEGATAQVR
GWSYGNLPKRDALRFSRAVMKFGNENQITLIAEEVGGAVAAAPIDAQIELFQALVEGCRE
AVEVGNAEPKGPLLDFFGVPVKANDLFNRVQELQLLAKRISRYEDPIRQFRVLMYLKPSN
WSKGCGWNQIDDARLLLGIHYHGFGNWERIRLDERLGLTKKIAPAELQHHETFLPRAPNL
KERANALLEMEVAAIGGGKNAGTKAGRKASKKEKQNTLNVSISRGRDKKGKPGSPKVNFK
MSRDRHKRPQKVELVKEEGEMSDNEEVYVHFKEVKWMEWCEDVMIDEIKTLRRLQRLQTT
SADLPKDKVLSKIRNYLQLLGRKIDEIVLEHEDELYRQDRMTMRLWNYVSTFSNLSGERL
HQIYSKLKQEREEEGGDGPSHINGAIPGHVDRDGDPNYPPLSHSVEKQRGYKNAVAYQTS
QPIHKGIDAAKFEAWKRRRRAEGDTHPQLQPPAQRPTNNGIQLVDPNSLGILGAGPSDKR
LVSNERPYRMH
NT seq 5256 nt   +upstreamnt  +downstreamnt
atgatggcattttttcggaactattcaaatgacacagacgcacacgatgtcttggaagag
aaaagccagggacaaagcattggtaggattcgaagttcagtaggaagtgatgatgtgggt
gggagtgggactttttccgaaagagaatttgatattaatgcacactatcaaagtgacagg
gagccagacggttctgttaggctccataatgaagtggctgctgctagcggtgctggtgtt
tcaaattcaaattttcagccaccgggaagaagagtagctcctggaaaatggggttcgact
ttttggaaggactgtcagcctatggaccaccagggtggatcggactctgggcaggattcg
aaatctgaccacaggaatttggaagcttcggattataattcatcagatgacagggatgat
aggttggatttggaagatgatgaggcgcagaaaggcaaggctcaaaggggccattctgat
gttcctgcagatgagatgttatctgatgaatactatgaacaggatggggaagagcaaagt
gataccatgcattatacaggccttagcaattctgttgggttaaatactaggccaaagtct
aagcctgcttctcttagtagcactatgtccaggagttcaagagctttaaataacttcaac
tatgatgatgaggaaagcaatcatgatgttgattatgaagaggaggaggaagaagatgaa
gatgaccctgatgatgcagattttgagcctgactatgatgctgcaagtggtcatgctggg
aatcagttcgttaaacaggacaaagactgggatggtgaagattctgaggaagaagacaat
agtgatggtgatgtagatatttcagatgaagaggattcttattatagaaaaaaacctaaa
ggagtgcaacgtgttaaagttggacttagtgtcaaacccactaaagaacataaatccacc
aatcgacaaagaagagggaaatcatcatttgatgaggatgaatgctcagctgaggattct
gacagtgaaagcgtccatgatttcaagagcatcgctagaagtggtggaaatcaccgtata
agtagtgctcgttctaatacattcataagcatgggaagaaacagtgaggttcgtacttct
agtaggtctgtacggaaagtatcatacgttgagagtgaagaaagtgaagaaattgaggaa
gtcaagaagaagaagactctaaaggatgaagctgaagaggaagatggtgactcaattgaa
aaggtgttatggcatcaaccaaagggcatggctgatgatgctattagaaacagtagatct
acagagcctgttctgctaagccacttgtttgattctgaaccagattggaatgagatggaa
ttcctgattaaatggaaggggcagtcacatcttcattgtcaatggaaatcgttttttgag
ctacaaaatcttagtggttttaagaaggttctaaattacacaaaaaaggtgatggacgat
gcgaaatacaggaaggcgctgtcacgcgaggagattgaggtaaacgatgtaagtaaggaa
atggacttggatctaatcaagcaaaatagtcaggtggagagagtaattgttgatcgaatc
agtaaggatgcctctgggaatgtgatgtcagagtatttggtcaagtggcagggattgtct
tatgcagaagcaacatgggaaaaggatatagatattacatttgcacaagatgctattgat
gagtataaggctcgtgatgctgcaatggctgtgcagggaaaaattgtagatcaccagcgt
aagaaaggcaaagcaagtttgcggaaacttgatgaacaaccagagtggttaaggggagga
aagcttcgtgattatcagctagagggtttgaattttcttgttaacagttggagaaatgat
actaatgtcatcttagctgatgaaatgggtcttggtaaaactgtccagtcagtatctatg
cttggtttcttacagaatgctcaacaaatccctggaccatttcttgtggttgttccatta
tcaaccttatcaaactgggctaaagaattcaagaagtggctttcagatatgaatgttatt
gtatatgttggtactcgtgcaagccgagaggtttgtcagcaatatgaattttacaatgac
aagaaaattggcagacctataaaatttaataccctgctaactacgttcgaggtagttctg
aaggataaggcagtactgtctaagataaagtggaactatttgatggttgatgaagctcat
aggttgaagaatagtgaggcacagttatacacaacgctttcagaatttagtactaagaac
aagttgctaattactggaactccattacagaacagcgttgaggagttatgggctctgctt
catttccttgatcctcacaagtttgaaagtaaggacgattttgttcaaaattacaagaac
cttagcacatttgatgaaaatgagcttgctaatcttcacatggaattgaggcctcacatt
cttcgaagagttatcaaggatgtagagaaatctttgcctccaaaaattgagcgtatcctt
agggttgagatgtccccgcttcagaaacagtactataggtggattttggaacgcaacttc
catgacttaaacaagggtgttcgtggaaatcaggtctcacttttaaatatagtggttgaa
ttgaagaaatgctgcaatcatccctttctgtttgaaagtgctgatcatggttatggcggg
gacactagcatgaatgatattagtaaattggaaagaattatattaagcagtgggaagcta
gtcatacttgacaagttgcttaccaggttgcatgaaacaaagcatagagttctagtcttt
tcccagatggttagaatgctggatatactagcggagtacttgttgctcagaggattccaa
tttcagaggcttgatggtagtacaaaggcagagttacgacagcaggctatggatcatttc
aatgcacctggaagtgatgatttctgcttccttctttctactcgggctggtggccttggt
ataaaccttgcaactgcggacactgttataatatttgattctgactggaatccgcagaat
gacttgcaggcaatgagtagagctcatagaattgggcaacgtgaagttgtcaacatttac
agatttgtgactagcaaaagtgttgaggaagatatcctggagcgagctaaaaaaaagatg
gtgcttgaccatttggtgatccaaaaattaaatgcagagggtagattggagagaaaagaa
acaaagaaagggagtcattttgacaagaatgagctatcagcaattttgagatttggggct
gaagagttggtcaaggaggacagaaatgatgaagaaagcaaaaaaaggctgttaagtatg
gatatagatgaaattcttgaaagggcagagaaggttgaggagaaagtgggtgaggaggaa
gggaatgaattgttgagtgcttttaaggttgctaatttctgtaatgctgaagatgatggt
actttctggagtcgttggataaaaccagatgctattgcacaagccaaagatgctctggct
cctcgtgctgcaaggaataccaagagttatgccgagacaagtcaacctgagaggagtaac
aaaagaaagaagaagggctctgattctcaggagcttcaggagagagtacaaaagcgccgt
aaagcagaatactccgctcccttggcaccaatgattgagggagcaactgctcaagtgaga
ggatggtcttatgggaatctgcctaaaagagatgctctgcgcttttctcgagcagttatg
aaatttgggaatgagaaccaaatcactttgatagcagaggaagttggtggtgctgttgca
gcagctccaattgatgcacagattgagcttttccaagctttggttgaaggatgcagagaa
gcagttgaagtaggaaatgcagaacctaagggaccattattggacttctttggcgtccct
gttaaggcgaatgatctgttcaatcgtgtccaagaacttcagttgttagcaaagcgaata
agtaggtatgaagatcctataagacagttccgtgtgttgatgtaccttaaaccctctaat
tggtccaaggggtgtggatggaatcagattgatgatgcgagactgcttctgggaatacac
taccatggatttggaaattgggaaaggataagattagatgaaaggcttggcctcacgaag
aagattgctcctgctgaacttcaacaccatgaaacctttctgccacgagccccaaatttg
aaggaacgtgctaatgcacttttggaaatggaagttgcagcaattggtggtggtaagaat
gctggtaccaaggctggtcgaaaggcttcaaagaaagaaaagcagaatactcttaatgta
tcaatatctcgtggaagagataagaaggggaaaccgggttctcctaaagtcaattttaaa
atgagtagggacaggcataagaggcctcagaaagttgaactagttaaagaagagggcgaa
atgtctgacaatgaggaggtatatgtgcactttaaagaagtgaagtggatggagtggtgt
gaagatgttatgattgatgaaataaaaacccttcgtcgtctccaaagattgcagactacc
agtgctgatcttccgaaggataaggtgctttcaaaaattcggaattatctgcagcttctt
ggaaggaaaatagatgaaattgtcttggaacatgaagatgagctctatagacaagatagg
atgactatgcgcttatggaactatgtctctacattctcgaatctttctggtgagaggctg
catcagatttattccaaacttaagcaggagcgggaagaagagggaggggatggaccctca
catatcaatggtgctatacctggtcatgttgatagagacggtgaccctaactacccccct
ttgtcacattctgttgagaagcaaagagggtacaagaatgcagtggcatatcaaacatca
caaccaattcacaaaggcattgatgctgcaaagtttgaagcttggaaacgacgacggaga
gcagaaggggatacccatccccaactccagcccccagctcaaagacctacgaacaatggt
atccaattggtagatccaaactccttggggattcttggggcaggaccatcagataaacgt
cttgttagtaatgagagaccgtatcggatgcattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (31)   

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